Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120895g00012 ATGGTTATGGCTCCATTCAAGGAGGAGCAGCCTCAGCCTCAGCCACCGCCCATCGACCACGCCAAGACCCTCATCTGTGCCCTCAACTTCCTCTCACGTGATCTCCCTCTCCCTCCTCACCTCCTCACCTCCGTTTTTACCATCTATCACGACCACCCTTCTTCGCTCAACAACCTCCAAGATGATATAGGGAATTCTAGTGAAAATTTAATTACAGACCTTGAAGGTGCATTGCTTAAGCAACGGCCAAATTGTGTGTCGGGTTCCAGATTGGAGAATGCAAGGGAAAGCCGTTATCAAAATCGGATACAGCACCGATTAACTGAACTTGAAGGATTGCCTTCAACAAGGGGAGAGGACTTGCAAACAAAGTGCCTGCTTGAGCTTTATGGTCTAAAGCTAGGAGAGTTGCATTCAAAGGTTCGGTCTGAAGTGAGTTCTGAGTACTGGCTGAATGTTAAATGTGCATACCCCGACAAGCAATTGTTTGATTGGGGCATGATGAGATTGCAGCGTCCACTATATGGTGTTGGAGATCCGTTTGCCATGGATGCTGACGATCAAATAAGGAAGAAAAGGGATGCTGAGAGACTATCGAGATTAGAAGAGGAGGAAAAAACTCATATAGAGACTAGAAAAAGAAAATTTTTTGCAGAAATACTCAATACCGTCCGTGAGTTTCAATTGCAAATTCAAGCTGCTGTGAAGCGGAGAAAACAGAGGAATGATGGTATTCAGGCATGGCATGGAAGGCAAAGACAACGCGCCACACGGGCTGAGAAATTGAGATTCCAAGCCTTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGCAAGAATGAAAGATTAACCACGCTTCTTGAAGAAACCAATAAACTACTAGTAAATTTAGGAGCTGCTGTTCAACGTCAAAAGGACTCCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCAGAAGTTGATTTACCTGAGTCAGATGCCTCCAAGAATGAAAAAGAATCACCTCTCGATGAGGATTTGGATATGATAGATTCTGATCATAACGGTGATACTAGTGATTTACTCGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACGGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATATCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAACGGGATTTTGGCTGATGAAATGGGTCTTGGGAAGACAATACAAACAATTTCATTAGTAGCGCATCTTATGGAGCACAAGGGTGTTACTGGTCCCCACTTGATTGTTGCTCCGAAGGCTGTTCTGCCAAATTGGATGAACGAATTTTCAACATGGGTTCCAAGCATAACAACTATTCTTTATGATGGACGCTATCACATTCAACGCAGACTTCTGTTAACTGGCACCCCAATTCAAAACAGCTTGCAGGAGTTGTGGTCCCTGCTAAATTTCCTCCTTCCAAACATTTTCAACTCTGTTCAGAATTTCGAGGACTGGTTTAATGCCCCTTTTGCAGATCGAGTTGATGTCTCTTTAACAGATGAAGAACAACTTTTGATTATTCGACGTCTACATCAAGTAATAAGGCCCTTCATATTAAGAAGAAAAAAGGATGAGGTGGAAAAATTTCTTCCCTCGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGACGTAGGCAGAGTTGGATTAGACAATGGTTCTGGAAAATCAAAGAGTCTGCAGAACTTAACAATGCAACTCAGAAAGTGTTGCAACCATCCATACCTCTTTGTGGGAGATTATGATATGTATAACCGTAAGGAGGAGATTGTCAGAGCATCAGGCAAGTTCGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCGGGCCACAGAGTCCTCCTTTTTTCTCAAATGACTAGACTCATGGATATTCTCGAGATTTATTTGAGGCTTCATGATTTTAAGTATCTAAGACTCGATGGCTCAACAAAAACGGAGGAAAGAGGCAGTCTATTACGAAAATTCAATGCTCCTGACTCCCCATACTTCATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATATTTGACAGTGATTGGAACCCCCAAATGGATCAACAAGCAGAGGATCGAGCACATCGCATTGGTCAAAAGAAAGAAGTTAGGGTTTTCGTGTTGGTTAGCGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGTATTGATGCAAAAGTCATCCAGGCAGGACTTTTCAACACAACATCAACAGCCCAGGATAGAAGAGAAATGCTAGAGGAGATTATGCGTAGAGGTACAAGTTCGCTTGGGACAGATGTACCTAGTGAGAGAGAAATTAATCGCCTCGCAGCTCGATCAGATGAGGAATTTTGGCTATTTGAAAAAATGGATGAAGAGAGAAGACTAAAGGAAAATTACAGATCTCGTTTAATGGACGAGCACGAATTGCCAGATTGGGTGTACTCTCCCCTTCATAACAAGGATGAAAAGGCCAAAGATTTCATCAATGGCAGTGCTACTGGAAAGCGGAAAAGAAAAGAAGTTGTCTATGCAGATACATTAAGTGATGTTCAATGGATGAAGGCCGTGGAGAATGGGGATCTATCAAGGCTTTCGGTAAGGGGGAAGAGAAGAGAGCACCTCTCATCTGAAAACGCGGCGCAAGCCAGCCACAATTCAGGAGCTGAAGAAAGGTTCTCGGAACTCCACACTGAAAGTTTCAACATGGCAAATGATAGAACAAGTGAAGATAGTTTCCATGTGATCCCTGCCTCCAAGAAGCCCAAGCTTGAAGGAGCTAATTCCCATAGACATGCATACGAGGATGTTAAAGGTAGTGGCTTGAACCAGCATGTGTTATCCTGGAATACTCACAGAAAGAAGAGGTCAAGCTATGGTCAGGGTTCATCATCCGATACAAAAGGGCAGAGTTCAAATGGAAGAGCTAGCTGGAACTGA 3090 0.4282 MVMAPFKEEQPQPQPPPIDHAKTLICALNFLSRDLPLPPHLLTSVFTIYHDHPSSLNNLQDDIGNSSENLITDLEGALLKQRPNCVSGSRLENARESRYQNRIQHRLTELEGLPSTRGEDLQTKCLLELYGLKLGELHSKVRSEVSSEYWLNVKCAYPDKQLFDWGMMRLQRPLYGVGDPFAMDADDQIRKKRDAERLSRLEEEEKTHIETRKRKFFAEILNTVREFQLQIQAAVKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHSDGIEPLEDSEVDLPESDASKNEKESPLDEDLDMIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLVAHLMEHKGVTGPHLIVAPKAVLPNWMNEFSTWVPSITTILYDGRYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMDEHELPDWVYSPLHNKDEKAKDFINGSATGKRKRKEVVYADTLSDVQWMKAVENGDLSRLSVRGKRREHLSSENAAQASHNSGAEERFSELHTESFNMANDRTSEDSFHVIPASKKPKLEGANSHRHAYEDVKGSGLNQHVLSWNTHRKKRSSYGQGSSSDTKGQSSNGRASWN 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120895g00012 1029 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 423 503 IPR014001 -
Stsc120895g00012 1029 Pfam Snf2-ATP coupling, chromatin remodelling complex 844 904 IPR029295 GO:0042393
Stsc120895g00012 1029 Pfam SNF2-related domain 392 473 IPR000330 GO:0005524|GO:0140658
Stsc120895g00012 1029 PANTHER SNF2/RAD54 HELICASE FAMILY 472 937 - -
Stsc120895g00012 1029 SMART helicmild6 665 749 IPR001650 -
Stsc120895g00012 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 550 IPR027417 -
Stsc120895g00012 1029 MobiDBLite consensus disorder prediction 969 1029 - -
Stsc120895g00012 1029 Pfam SNF2-related domain 474 616 IPR000330 GO:0005524|GO:0140658
Stsc120895g00012 1029 CDD SF2_C_SNF 627 760 - -
Stsc120895g00012 1029 MobiDBLite consensus disorder prediction 993 1029 - -
Stsc120895g00012 1029 MobiDBLite consensus disorder prediction 969 988 - -
Stsc120895g00012 1029 Gene3D - 357 471 IPR038718 -
Stsc120895g00012 1029 MobiDBLite consensus disorder prediction 308 356 - -
Stsc120895g00012 1029 Gene3D - 472 549 IPR038718 -
Stsc120895g00012 1029 Pfam Helicase conserved C-terminal domain 636 749 IPR001650 -
Stsc120895g00012 1029 SMART SnAC_2 842 904 IPR029295 GO:0042393
Stsc120895g00012 1029 FunFam Probable ATP-dependent DNA helicase CHR12 556 855 - -
Stsc120895g00012 1029 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 639 806 IPR001650 -
Stsc120895g00012 1029 SMART ultradead3 385 578 IPR014001 -
Stsc120895g00012 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 803 IPR027417 -
Stsc120895g00012 1029 MobiDBLite consensus disorder prediction 923 942 - -
Stsc120895g00012 1029 Gene3D - 556 853 IPR027417 -
Stsc120895g00012 1029 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120895g00012 Stsc-Chr120895 116213 122955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120895g00012 634 777 RAD5 or RAD16-like Gene Family AT5G22750 37.671 1.05e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc120895g00012 SNF2_N 3e-30 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120895g00012 - - bvg:104883899 1342.79