Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120895g00010 ATGGTGGGAATTAAAATGGGAACTTCATTGGCTAAGAAACGAACGCGTGTTGAGATTGCTAGTGAGCTGGAGAGGCCTCTTCTTTCAGCAGATGGCATTCAGGTTTCATACAATCAGACCAATGATTTTTCCTTAGATTATGATCCTGAAGGTGCTTGCTCTCCCAACCAACTTCATTTTCGCGTTCCTCAAAACCACACAATTGTTCATAAGCAAAGGACTCCTGCCATTTCTCATCCTTCTAATGTGCCTCTAGGTGATAGCTTGGTTTTAGATGTAGTTCATGATCATTTGGAAGATGTTGATGCTACTGGTGAAACACTTGAATTTCCCGCGGCTCAATTTGTTGAAACCCAAAAGCATAGCAGACCGAACGTTGAAAATGACAGACTGAAAGTGCAAGGAGATATCTCTGATCAAAGAAGTTGCCTCATGCTGGAGGTTAATGACGGTCCTTCTCGTGGAATCCGTTGTTCTATACAGTCATCAAATGCCTCTCGTCTACCACTAACCTTGGGAAGAGTTTCTCCAAGTGATTTGTTGTTAAATGATTCAGAAGTGTCGGGAAAGCATGCTCAAATAAACTGGAATTTGGATAAAATGAAATGGGAGTTGGTAGATATGGGTAGCTTAAATGGAACACAGTTGAATTCTCAGCCAATCCACAATGCAAAAACTGGAAGCAGGCGTTGTAGTGATCCGGTGGATCTTGCTAATGGAGATATCATAACACTTGGAACAACATCAAAAGCAATTGTTCATATTACTAACCAAAATCAGCAGCATATTCCGTTTGGGGTGGGTATGGCATCAGATCCCATGGCTTTGCGTCGTGGAGGCAAAAAGCTGCCTATGCAGGATGTTTGTTATTATCAATGGCCTCTGCCTGGGTTGGATCAGTTTGGAGTGTTTGGCATTTGTGATGGGCATGGAGGAGATGGGGCTGCCAAATCTGCTAGCAAACTTTTCCCCGAGATAATTGCCAATTTATTATCAAATTCATTAGCACGAGAGAGGGTTTTATCACTTCGTGATGCTTCAGAAATTCTTCGAGATGCATTTTCTCAAACAGAAGCAGCCATGAATCACGAGTGTGAGGGATGCACAGCAACAGTGCTTCTGGTGTGGCGTGATGGTGATGAAAATCTTTTTGCACAATGTGCAAATGTTGGAGACTCCACCTGTATCATATGTATTGATGGCAAACATATTAAGATGACAGAAGATCATAAGATAGCTAATCATTCAGAAAGACTCCGAATTGAAGAGACAGGAGATCCATTGAAAAATGGGGAGAAACGTCTACATGGTATGAAGGAATAA 1323 0.4195 MVGIKMGTSLAKKRTRVEIASELERPLLSADGIQVSYNQTNDFSLDYDPEGACSPNQLHFRVPQNHTIVHKQRTPAISHPSNVPLGDSLVLDVVHDHLEDVDATGETLEFPAAQFVETQKHSRPNVENDRLKVQGDISDQRSCLMLEVNDGPSRGIRCSIQSSNASRLPLTLGRVSPSDLLLNDSEVSGKHAQINWNLDKMKWELVDMGSLNGTQLNSQPIHNAKTGSRRCSDPVDLANGDIITLGTTSKAIVHITNQNQQHIPFGVGMASDPMALRRGGKKLPMQDVCYYQWPLPGLDQFGVFGICDGHGGDGAAKSASKLFPEIIANLLSNSLARERVLSLRDASEILRDAFSQTEAAMNHECEGCTATVLLVWRDGDENLFAQCANVGDSTCIICIDGKHIKMTEDHKIANHSERLRIEETGDPLKNGEKRLHGMKE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120895g00010 440 ProSitePatterns PPM-type phosphatase domain signature. 303 311 IPR000222 GO:0043169
Stsc120895g00010 440 ProSiteProfiles PPM-type phosphatase domain profile. 266 440 IPR001932 -
Stsc120895g00010 440 SUPERFAMILY PP2C-like 279 431 IPR036457 -
Stsc120895g00010 440 SMART FHA_2 169 221 IPR000253 GO:0005515
Stsc120895g00010 440 Gene3D - 274 439 IPR036457 -
Stsc120895g00010 440 FunFam Protein phosphatase 2C 70 139 273 - -
Stsc120895g00010 440 SUPERFAMILY SMAD/FHA domain 143 253 IPR008984 GO:0005515
Stsc120895g00010 440 Gene3D - 138 273 - -
Stsc120895g00010 440 CDD PP2Cc 278 425 IPR001932 -
Stsc120895g00010 440 SMART PP2C_4 260 438 IPR001932 -
Stsc120895g00010 440 Pfam Protein phosphatase 2C 278 438 IPR001932 -
Stsc120895g00010 440 Pfam FHA domain 171 246 IPR000253 GO:0005515
Stsc120895g00010 440 ProSiteProfiles Forkhead-associated (FHA) domain profile. 170 221 IPR000253 GO:0005515
Stsc120895g00010 440 PANTHER PROTEIN PHOSPHATASE 2C 254 426 IPR015655 GO:0004722|GO:0006470
Stsc120895g00010 440 CDD FHA_PP2C70-like 144 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120895g00010 Stsc-Chr120895 95544 98810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120895g00010 22 438 PP2C-type Phosphatase Gene Family AT5G19280 51.126 1.52e-149 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120895g00010 K01090 - gmx:100170642 579.711