Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120895g00008 ATGAAATCATCATCAAGAGTGAGTAGCAACACAGTGAATTCGATGGTTTTGGGTTTGGCAGCAAGTTCTTCACAACAAGTGCAAAAATCATCAATGGCCTTGTTTGGTGGCTTATTGGGTCAATACCAGAAGAGAAGGCTTCTCTTCACCTTTGAAGACAGTAACAATAACAATAATAATCATAACAACAATAAAGTAGCCAGTAACAAAGTTAACCCCTGGCTTGAATCAATGAGAGCTTCTTCTCCTCCACGAATCAACCCCAATAACAACAACAACCAAGACGATCACAACAAAAATAACTCTTGGATCGTTGGTCATCCATCGGCGTTGAAGATGTTCGACGAGATAATGTGGAAGTCGAAAGCGAAGAAGGTGGTTGTGTTTCTTGATTACGACGGAACTCTCTCCCCAATTGTTGCAGATCCGGAGAAAGCTTTCATGACCAAAAAGATGAGAGCGACGCTAAAGGAGATAGCAAAATTATTTCCCACTGCCATAGTAACTGGAAGGTGCATTGACAAGGTATATGAGTTTGTAAGATTGGGAGAAGTGTACTATGCTGGAAGCCACGGTATGGACATCAAGGGACCAACAACAAAAGGGCGCAATCATCATAAAGGTAATAATGAAGCGGTGCTCTTCCAACCTGCAAGTCAATTCCTGCCCATGATCAACCAGGTGTACAAGATCTTGGTAGAAAAAATGAAGGGTATTCCAGGGGCAAAAGTAGAAAACAACAAGTTTTGTTTGTCCGTGCACTTTAGATGTGTTGAAGAAAAGTGCTGGCCAGCATTGGCGGAGCAAGTTAATTCAGTGCTCAAGGAGTACCCAAAGCTTAAGTTAACACATGGGAGAAAAGTTATTGAGATTCGCCCAACTATTAAATGGGACAAGGGCAAGGCTATTGAATTCTTGTTAGAGTCACTAGGTTATGGAAATTCTAACAGCGTATTTCCAATCTATATTGGTGATGATAGAACTGATGAGGATGCTTTTAAGGTTCTACGTAGTAGGGGCCAAGGAATTGGTATTCTTGTTTCTCAAATTCAAAAAGAAACTAACGCTACCTACACTTTGCATGATCCTCTAGAGGTTGGACAATTTTTAAGGCGTTTGGCAGATTCCAAAAAAGCTTGTTCTAGGCAGACATGA 1155 0.4104 MKSSSRVSSNTVNSMVLGLAASSSQQVQKSSMALFGGLLGQYQKRRLLFTFEDSNNNNNNHNNNKVASNKVNPWLESMRASSPPRINPNNNNNQDDHNKNNSWIVGHPSALKMFDEIMWKSKAKKVVVFLDYDGTLSPIVADPEKAFMTKKMRATLKEIAKLFPTAIVTGRCIDKVYEFVRLGEVYYAGSHGMDIKGPTTKGRNHHKGNNEAVLFQPASQFLPMINQVYKILVEKMKGIPGAKVENNKFCLSVHFRCVEEKCWPALAEQVNSVLKEYPKLKLTHGRKVIEIRPTIKWDKGKAIEFLLESLGYGNSNSVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSQIQKETNATYTLHDPLEVGQFLRRLADSKKACSRQT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120895g00008 384 MobiDBLite consensus disorder prediction 78 102 - -
Stsc120895g00008 384 CDD HAD_TPP 127 367 - -
Stsc120895g00008 384 NCBIfam HAD-IIB family hydrolase 128 338 IPR006379 -
Stsc120895g00008 384 FunFam Trehalose 6-phosphate phosphatase 224 383 - -
Stsc120895g00008 384 Gene3D - 128 360 IPR023214 -
Stsc120895g00008 384 Gene3D - 210 294 - -
Stsc120895g00008 384 SUPERFAMILY HAD-like 127 374 IPR036412 -
Stsc120895g00008 384 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 59 381 IPR044651 GO:0004805|GO:0005992
Stsc120895g00008 384 FunFam Trehalose 6-phosphate phosphatase 218 294 - -
Stsc120895g00008 384 Pfam Trehalose-phosphatase 129 363 IPR003337 GO:0003824|GO:0005992
Stsc120895g00008 384 NCBIfam trehalose-phosphatase 123 374 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120895g00008 Stsc-Chr120895 77564 80913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120895g00008 122 375 Trehalose Biosynthesis Gene Families AT1G70290 25.632 5.74e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120895g00008 K01087 - gmx:100785139 468.388