Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120894g00005 ATGACAAAGACCACTGCTACTTCTACCACACCCTGCTGCACCAAAATCGGGATCAAGAAAGGCCCATGGAGCGCCGAGGAAGACGAGATCCTCGCCAATTTTGTCCACAGAGAAGGAGAGGGCCGCTGGCGTACTCTCCCCAAGCGGGCCGGGCTTCAGCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAGCGGGGCCAGATCGCTCCCGACGAGGAAGATCTCATTCTCCGCCTGCACCGTCTCCTGGGCAACAGGTGGGCTTTGATAGCTGGTAGATTACCTGGGAGGACTGATAACGAGATCAAGAATTACTGGAATACCCATCTAAGCAAGAAGCTCATCAAGCGAGGGATAGATCCAAGAACCCATAAGGCGTTAGTCATCAACAACACCACCAACAATAATAATTCTACTACTATTACTACTACGGTTACTTCAAATGGTGTTGTTCTCAATGATTCCCTGAAAGTTGGATATAATCATCATCATCATCGTCTTCATCATGATCGGTGTTCAATTGTAATGCCGCCGCAGCAACAACCTATGACGGTGGTTAATCCTGCATCAGAAATCGGCAACGTCATCAATAACAGCAAATTTGATTATGTTCCAACGATAAGTGCAGGTGGTGGAGACATAGAAGAGCACAATAATAATGCCATTAATGATGCGACTGGGGATGAGAGTATTGTATTTTATCATGAAAAGAATGATACTGCAGCAGAGGAAGATACACTAATGGTTTTCCTCAATTCTTTATTTGATGGCAATAATAATACTAATAATGAAGCGAAGATGAATAATAGCAATGAAAATGCTGCTACTGCAACGGAAGAAGAAGAATTAGCGGAGTTTCAGCATTATTATCATCATCATCATGGTCAGCATGATCATGATGCTACTACGATGATGTTCCCTCCACCAGTTTCAACTTCCTTTCATCTTGAAGATTGGGAAGCTGAATTCAGCAATGCACTAATGAATCAACAAGATGCTTCATCATCACCACCACCTTCTATTAAGTAA 1053 0.4492 MTKTTATSTTPCCTKIGIKKGPWSAEEDEILANFVHREGEGRWRTLPKRAGLQRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWALIAGRLPGRTDNEIKNYWNTHLSKKLIKRGIDPRTHKALVINNTTNNNNSTTITTTVTSNGVVLNDSLKVGYNHHHHRLHHDRCSIVMPPQQQPMTVVNPASEIGNVINNSKFDYVPTISAGGGDIEEHNNNAINDATGDESIVFYHEKNDTAAEEDTLMVFLNSLFDGNNNTNNEAKMNNSNENAATATEEEELAEFQHYYHHHHGQHDHDATTMMFPPPVSTSFHLEDWEAEFSNALMNQQDASSSPPPSIK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120894g00005 350 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Stsc120894g00005 350 Pfam Myb-like DNA-binding domain 77 118 IPR001005 -
Stsc120894g00005 350 FunFam Myb transcription factor 17 73 - -
Stsc120894g00005 350 Gene3D - 19 72 - -
Stsc120894g00005 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Stsc120894g00005 350 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Stsc120894g00005 350 FunFam transcription repressor MYB5-like 77 146 - -
Stsc120894g00005 350 CDD SANT 78 118 IPR001005 -
Stsc120894g00005 350 SMART sant 19 69 IPR001005 -
Stsc120894g00005 350 SMART sant 72 120 IPR001005 -
Stsc120894g00005 350 CDD SANT 22 67 IPR001005 -
Stsc120894g00005 350 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Stsc120894g00005 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 267 - -
Stsc120894g00005 350 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Stsc120894g00005 350 Gene3D - 77 150 - -
Stsc120894g00005 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120894g00005 Stsc-Chr120894 49890 51068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120894g00005 3 139 MYB Transcription Factor Family AT3G13540 78.102 3.78e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120894g00005 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120894g00005 K09422 - twl:120016689 256.529