Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120894g00002 ATGGAAATTCATTTCCAGCAACCAAATCTTCAACACAATAATAGTAACAATGGTAGTAGTAAGAATAAAATTGGGATCAACAAAGGAAACAAATTCAAAGGAAGAAGCAAAAACAGCAACAATACAAACAAATTCGTTGGAGTGAGGCAGAGGCCTTCCGGGAGATGGGTAGCCGAGATCAAGGACACCACACAAAAGATAAGGATGTGGCTTGGGACATTTGAGACGGCCGAGGAGGCGGCCAGAGCCTACGACGAGGCTGCCTGCCTCCTCCGCGGATCCAATACTCGAACCAACTTCATCACTCAAGTCTCCGCTGATTCTCCCCTCGCCTCACGAATCCGGAACCTTCTTAACGACAAAAAAGCCATGAAACAACAAGAAAACGGTGTTTCTTGCGCCTCAAGAAACCTCAGCACTAGTAGTAGTAGCATCAGTTCAAAATCAAATGCTACTACTCCAACAAAAATGGAAGAAATTGAGGACTCTATTCCAAAAAAAATTCAAGTTCTTCGTGATGATTATGTTTATAAACCCGATTTGAGCAACTGCGATTTATTAAATCCGCAGTGTAATAGTTTTTGGTGGGGTGGTCTAGGGCCGATCTTTGACCGGCTTCCGTTTGCTCAGTTATTGGATGCACCGAAGGTCGAGGATGGCGGGCTTGCCGGCGGCCCAACTGAAATGGAGCTTCTAGAATTTGAAAGAATGAAAGTTGAGAGACAAATTTCAGCTTCACTTTATGCAATTAATGGAGTTCAGGAGTACATGGAAACTGTTCAAGAATCTAATGAAGCTCTTTGGGATCTTCCACCTTTGTGCTCATTATTCTGCTAA 837 0.4349 MEIHFQQPNLQHNNSNNGSSKNKIGINKGNKFKGRSKNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITQVSADSPLASRIRNLLNDKKAMKQQENGVSCASRNLSTSSSSISSKSNATTPTKMEEIEDSIPKKIQVLRDDYVYKPDLSNCDLLNPQCNSFWWGGLGPIFDRLPFAQLLDAPKVEDGGLAGGPTEMELLEFERMKVERQISASLYAINGVQEYMETVQESNEALWDLPPLCSLFC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120894g00002 278 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Stsc120894g00002 278 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Stsc120894g00002 278 MobiDBLite consensus disorder prediction 130 157 - -
Stsc120894g00002 278 MobiDBLite consensus disorder prediction 130 159 - -
Stsc120894g00002 278 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Stsc120894g00002 278 FunFam ethylene-responsive transcription factor RAP2-11 43 102 - -
Stsc120894g00002 278 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Stsc120894g00002 278 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Stsc120894g00002 278 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Stsc120894g00002 278 MobiDBLite consensus disorder prediction 1 48 - -
Stsc120894g00002 278 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Stsc120894g00002 278 MobiDBLite consensus disorder prediction 1 50 - -
Stsc120894g00002 278 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 189 - -
Stsc120894g00002 278 CDD AP2 44 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120894g00002 Stsc-Chr120894 19927 20763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120894g00002 31 278 AP2-EREBP Transcription Factor Family AT5G19790 43.019 9.53e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120894g00002 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120894g00002 K09286 - gmx:100796898 314.309