Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120894g00001 ATGACAATTCTAACCTTCCTTCTTTTCACCATCCCCACCCTGTTACTCTTGTTCTTGCATCAAGTTTCTTCTACAAACGATACCATAACACAATCTGAACCACTTCACGATGATGGTAGCACAATAACTTCCAAGGGTGGAATCTTTGAGCTGGGTTTCTTCAACCCAGGTAGTTCCACAAACCGTTACATAGGAATATGGTACAAGAACATCTCCGTTAAGAGAGTTGTTTGGGTCGCAAACCGCGACGATCCAATCAAAGACAACTCCGGCGTGCTTCACATAAGCGAAGGCGGAAATCTTGTGCTTTCAACGAAGAATCAAACGCTTGTTTGGTCGGCAAACTCGACGGCGACGGCGAAGACCGCGGTTGCGCGGCTCTTAGACAGCGGAAATTTAGTGCTAAGAGAAGATAACAAAGAAGATGATGAGGAAGAGGGGTTGTTATGGCAGAGTTTTGATTATCCATGTGATACGCTGCTTCCAGGAATGAAGCTTGGATATGATTTGAGAAGTGGCTTGGATAGGAAGCTAACTGCCTGGAAGAACTGGGATGATCCATCAACTGGGTATCTTTCTTGGGCCATGATGCTTACCAGTGACCCTGAATTGGTGCTTTGGAAAGGGTCAGTGAAGTACAATAGGAATGGACCATGGGCTGGCCTTGCATTAAGTGGAGCACCCTTATGGAGGGGCACTCAACTTATTCTTCAAAACATGATCAACACCACCAATGAAGTCTACTACACCTACACCCTCACACAAGGCAGTTCCATGACGATCACAATCACCGTTTTAAACCAAACCCGAAACCTTCGACAACGAATCGTATGGGTCTCACAAGACAACACATGGAAGCCCTTCCTATCTTTTCCCGGAGATCTCTGCGATGTTTATAACACTTGTGGCCCATATGGCTATTGCATTTCGAATCGATCACCCAACTGTGAGTGCTTGCAAGGCTTCACTCCCAAATCACCACAGGCTTGGGATACAATCGATTATTCACAGGGTTGTGTGAGGAGTGATCCGTGGAGTTGTAAGGTTAAAGATAAAGATGGATTTCGCAAGATTTCTGGGTTGAAATTGCCGGATACTATGCATTCTTGGGTTGATGGAAGTATGAAGCTTGAGGATTGTGAAGCCAAGTGCATGGGGGATTGTTCTTGTACGGCTTATACAACGTTGAATGCGAGTGATGGCAGTGGCTGTGTTATTTGGTTTGGTGATCTTCTTGATTTGAGAGTCTATGACGGAGGACAGGATTTGTATGTCAGAATGGCTCATTCAGATTCCAAAAGGAAGACTCGCATCTTAGCAATTTCTATCACACTTCCAACAGTCTTTGTGTTACTTTCGTTAATAATCTCCTGCGTTTATTATAGAGCCCGAAGAAAACGTCAAGTAGAGAAAACAACCATGCTGGAAGAAAATAAAGATGAAAGAGGACAAGAAGATTTAGAGCTTCCCACTTACGACCTTGCTACAATAGTGAAGGCCACTAACAACTTCTCGATTCACAATAAACTTGGTGAAGGAGGGTTTGGGCCAGTATACAAGGGTACACTTGAAACTGGACAAGAAATTGCAGTGAAACGACTTTCAGGAAGTTCTGCACAAGGAATGAATGAATTTAAGAATGAAGTAATATTGTGTGCTAAACTTCAACATCGGAATCTTGTGAGGGTTCTTGGATGTTGCATTCAAGAAGATGAGAAAATGCTAATTTATGAATACATGTCTCACAAAAGCCTTGACTTGTTCCTTTTCGATTCAACTCAAAGCAAACTTTTGGATTGGTCTAAGCGCTTTGACATCATTTGCGCAATTGCTCGAGGGCTTCTTTATCTTCATCAAGATTCGAGATTAAGAATCATACACAGAGATCTTAAAACGAGCAATATTTTATTAGACTGTGATATGAATGCAAAAATCTCAGACTTTGGCATGGCAAGATTGCGTGGGGGAGATCAAGACGAAGGAAATACAAATAGAATTGTTGGAACATATGGTTACATGGCTCCAGAATATGCTATCGACGGGTTATTCTCCACAAAATCGGATGTATTTAGCTTTGGTATACTACTGCTAGAGATTATAAGTGGAAAGAAAAACAAAGGACTTACCTATTCAAGCAATAGTTATAATCTCATGGGACATGCATGGAGGTTGTGGAATGAAGGCAACTTAAATGAATTGATTGATGACTGTTTAAGGGAGGATTCATCATTAAGTAATAATCGAAGAGAAATTTATCGTTGCATTCATATTGGTCTTTTATGTTTGCAACGTCATCCAGATGATAGACCAACAATTGCAACGGTGGTTAAGATGTTGAACAATGACAACACATTGCCACAACCAAAGGAGCCTGGTTTCTTGATTCATGATGATGGAATAAGGGATACTTCTTCTTCTTCAATAAATGAAGTATCTATCTCTTTGTTGAAACCTAGATGA 2460 0.4146 MTILTFLLFTIPTLLLLFLHQVSSTNDTITQSEPLHDDGSTITSKGGIFELGFFNPGSSTNRYIGIWYKNISVKRVVWVANRDDPIKDNSGVLHISEGGNLVLSTKNQTLVWSANSTATAKTAVARLLDSGNLVLREDNKEDDEEEGLLWQSFDYPCDTLLPGMKLGYDLRSGLDRKLTAWKNWDDPSTGYLSWAMMLTSDPELVLWKGSVKYNRNGPWAGLALSGAPLWRGTQLILQNMINTTNEVYYTYTLTQGSSMTITITVLNQTRNLRQRIVWVSQDNTWKPFLSFPGDLCDVYNTCGPYGYCISNRSPNCECLQGFTPKSPQAWDTIDYSQGCVRSDPWSCKVKDKDGFRKISGLKLPDTMHSWVDGSMKLEDCEAKCMGDCSCTAYTTLNASDGSGCVIWFGDLLDLRVYDGGQDLYVRMAHSDSKRKTRILAISITLPTVFVLLSLIISCVYYRARRKRQVEKTTMLEENKDERGQEDLELPTYDLATIVKATNNFSIHNKLGEGGFGPVYKGTLETGQEIAVKRLSGSSAQGMNEFKNEVILCAKLQHRNLVRVLGCCIQEDEKMLIYEYMSHKSLDLFLFDSTQSKLLDWSKRFDIICAIARGLLYLHQDSRLRIIHRDLKTSNILLDCDMNAKISDFGMARLRGGDQDEGNTNRIVGTYGYMAPEYAIDGLFSTKSDVFSFGILLLEIISGKKNKGLTYSSNSYNLMGHAWRLWNEGNLNELIDDCLREDSSLSNNRREIYRCIHIGLLCLQRHPDDRPTIATVVKMLNNDNTLPQPKEPGFLIHDDGIRDTSSSSINEVSISLLKPR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120894g00001 819 Gene3D Transferase(Phosphotransferase) domain 1 580 789 - -
Stsc120894g00001 819 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Stsc120894g00001 819 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Stsc120894g00001 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 153 - -
Stsc120894g00001 819 Pfam Protein tyrosine and serine/threonine kinase 505 779 IPR001245 GO:0004672|GO:0006468
Stsc120894g00001 819 CDD STKc_IRAK 510 781 - -
Stsc120894g00001 819 CDD B_lectin 38 156 IPR001480 -
Stsc120894g00001 819 Gene3D Phosphorylase Kinase; domain 1 463 579 - -
Stsc120894g00001 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Stsc120894g00001 819 SMART serkin_6 504 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120894g00001 819 Pfam D-mannose binding lectin 76 182 IPR001480 -
Stsc120894g00001 819 ProSiteProfiles PAN/Apple domain profile. 347 428 IPR003609 -
Stsc120894g00001 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 787 - -
Stsc120894g00001 819 SMART blect_4 32 156 IPR001480 -
Stsc120894g00001 819 Pfam S-locus glycoprotein domain 215 326 IPR000858 GO:0048544
Stsc120894g00001 819 SUPERFAMILY Protein kinase-like (PK-like) 489 779 IPR011009 -
Stsc120894g00001 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 187 IPR036426 -
Stsc120894g00001 819 SMART ntp_6 350 427 IPR003609 -
Stsc120894g00001 819 Pfam PAN-like domain 347 414 IPR003609 -
Stsc120894g00001 819 ProSiteProfiles Protein kinase domain profile. 504 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120894g00001 819 CDD PAN_AP_plant 346 428 - -
Stsc120894g00001 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 579 - -
Stsc120894g00001 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Stsc120894g00001 819 Gene3D - 20 153 IPR036426 -
Stsc120894g00001 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120894g00001 Stsc-Chr120894 4343 17842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120894g00001 429 807 Receptor kinase-like Gene Family AT4G23190 51.042 3.75e-123 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc120894g00001 PK_Tyr_Ser-Thr 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120894g00001 - - gmx:100790436 978.008