Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120893g00031 ATGGGAATTGATGAGGCAAAACAGTCATTGCTTGCAAGAGATCATTTTCATGACCTCCAGAGAAGAAGGTCTACCAGGAATTATGGCACTGCTGCTTCATCAGATTCCTCGTCACAGACCATCAAACAAAATAGTAATGTAATTACAGTCCAAAATAATAATAACCCTTCAACACCAAACCCAGAATTTTTTAATTTGAAACCAGTGTTGTTGTGGTCAACAATCTACCTAGGTGGAGGTACCCTATGCTTCTATCTGGTAAGTAACCAAATTGAAGGTATCAAAACCAATCCCTTTCTTGATGCACTTTACTTCTGTGTTGTCACTATGACCACTGTGGGTTATGGAGATCTTGTCCCCAAAAGCAGTGTGTCAAAGCTACTTGCATGCTTCTATGTCTTTACCGGAATGGCCCTCGTCGGTTTGATTCTCAGCAAGGCAGCAGATTACATTGTAGAGAAGCAAGAAATGCTGGTTGTTAAGGCCATGCACAAAGAGCTTGACAAAGATCAATCTAACAATAACAAGGCCAGACACAAGTTCTTGGTTGCAGTTTGCAGTTTCTTGGTGCTTATCACAGTGGGAGTGATCTTCCTTTCTTGTGTTGAGGATCTGGATCTTGTGGATGCATTGTATTGTGTTTGTTCGACGGTGACCACATTGGGTTATGGAGATGAGAGCTTTTCAACTAGGATTGGTCGTGCTTTTGCTGTGTTATGGATATTGAGCAGCACCATTTGCTTAGCTCAATGCTTTGCTTATCTTGCTGAGATGCACACTGATGAAAAACAAAAATCACTTGCCAAAATGATTCTTTCAAGAAAAATCTCACGTCCTGATCTTGAGGCTGCTGATCTTGATGGAGACAAATCTGTAAGTGCTGCAGAGTTTATTGTATACAAGTTGAAGGAAATGGGAAAGATCAACGAAGATGATGTCTCGAATGTAATGGAATGGTTTAGAAAACTAGATATAGATAAATCAGGAACTCTCACAGAAGCTGATATCATTTGA 1014 0.4024 MGIDEAKQSLLARDHFHDLQRRRSTRNYGTAASSDSSSQTIKQNSNVITVQNNNNPSTPNPEFFNLKPVLLWSTIYLGGGTLCFYLVSNQIEGIKTNPFLDALYFCVVTMTTVGYGDLVPKSSVSKLLACFYVFTGMALVGLILSKAADYIVEKQEMLVVKAMHKELDKDQSNNNKARHKFLVAVCSFLVLITVGVIFLSCVEDLDLVDALYCVCSTVTTLGYGDESFSTRIGRAFAVLWILSSTICLAQCFAYLAEMHTDEKQKSLAKMILSRKISRPDLEAADLDGDKSVSAAEFIVYKLKEMGKINEDDVSNVMEWFRKLDIDKSGTLTEADII 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120893g00031 337 Gene3D - 281 337 - -
Stsc120893g00031 337 SUPERFAMILY Voltage-gated potassium channels 175 273 - -
Stsc120893g00031 337 SUPERFAMILY EF-hand 281 336 IPR011992 -
Stsc120893g00031 337 Gene3D - 164 279 - -
Stsc120893g00031 337 ProSiteProfiles EF-hand calcium-binding domain profile. 311 337 IPR002048 GO:0005509
Stsc120893g00031 337 Pfam Ion channel 74 152 IPR013099 -
Stsc120893g00031 337 Pfam Ion channel 188 258 IPR013099 -
Stsc120893g00031 337 ProSitePatterns EF-hand calcium-binding domain. 324 336 IPR018247 -
Stsc120893g00031 337 Gene3D - 66 163 - -
Stsc120893g00031 337 ProSitePatterns EF-hand calcium-binding domain. 285 297 IPR018247 -
Stsc120893g00031 337 PRINTS Two pore domain K+ channel signature 108 136 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc120893g00031 337 PRINTS Two pore domain K+ channel signature 219 228 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc120893g00031 337 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 97 315 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc120893g00031 337 SUPERFAMILY Voltage-gated potassium channels 69 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120893g00031 Stsc-Chr120893 133573 134669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120893g00031 50 337 Ion Channels AT5G55630 55.738 9.77e-113 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120893g00031 K05389 - gmx:100799492 407.912