Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120893g00025 ATGTCAAAGCCGTCATTTGGGTTAGTATGTCTAATCTTCTGTAACTCCATTTACATGCAATTTTATTTCCGTATGATAACTAAGGCCTTTGAAACTATGATGCAGGACATATTTGCTGCTGGAACAGACACTTCGGGAGTAGTTATAGAGTGGGTTATGTCGGAATTGATGAGAAGTCCCAGAGCTATGAAGAAGGCACAGGCTGAGATTCGACAAGCTTTGAGAGGAAAGCAAACAATCAGGGAGGCAGATGTATCAGAACTTCCCTACTTGAAGGCTGTGATCAGCGAAGCAATGAGGTTACACACTCCTTTTCCTCTGTTGCTTCCAAGACAAGCCAGACAAGACTGCACCATCGGTGGATACCATATACCCATGAATACTAAAGTCATGATAAATGCGTATGCGCTCGGAAGAGATCCTGATTACTGGTATGATGCGGAAACCTTCCTACCAGAAAGGTTTGTAGACACTCCTATGGATTTCAAAGGGACAAACTTGGAGTACGTTCCTTTTGGAGCAGGAAGGAGAATGTGTCTGGGACTTACATTTGGTTTAGCCAACGTGGAGTTTGCTGTAGCTATGCTACTCTACCACTTCAACTGGCAACTCCCTAACGGAATTAAGCCAGAGGATTTGGATATGACTGAAGCAAAAGGAGCCGTGGTTGGAAGGAAAAACAACCTTTACCTGATTCCCACACCTTACCATTCTTAG 717 0.4379 MSKPSFGLVCLIFCNSIYMQFYFRMITKAFETMMQDIFAAGTDTSGVVIEWVMSELMRSPRAMKKAQAEIRQALRGKQTIREADVSELPYLKAVISEAMRLHTPFPLLLPRQARQDCTIGGYHIPMNTKVMINAYALGRDPDYWYDAETFLPERFVDTPMDFKGTNLEYVPFGAGRRMCLGLTFGLANVEFAVAMLLYHFNWQLPNGIKPEDLDMTEAKGAVVGRKNNLYLIPTPYHS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120893g00025 238 Pfam Cytochrome P450 34 228 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 Coils Coil 63 83 - -
Stsc120893g00025 238 SUPERFAMILY Cytochrome P450 33 235 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 Gene3D Cytochrome P450 25 230 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS P450 superfamily signature 179 190 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS P450 superfamily signature 40 57 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS P450 superfamily signature 93 104 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS P450 superfamily signature 170 179 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PANTHER OS08G0105600 PROTEIN 22 237 - -
Stsc120893g00025 238 FunFam Predicted protein 38 231 - -
Stsc120893g00025 238 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 172 181 IPR017972 GO:0005506|GO:0016705
Stsc120893g00025 238 PRINTS E-class P450 group I signature 29 46 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS E-class P450 group I signature 49 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS E-class P450 group I signature 169 179 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS E-class P450 group I signature 179 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS E-class P450 group I signature 92 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120893g00025 238 PRINTS E-class P450 group I signature 133 157 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120893g00025 Stsc-Chr120893 98597 112502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120893g00025 24 236 Cytochrome P450 AT3G26300 47.418 2.66e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120893g00025 - K15472 gmx:100794503 309.301