Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120893g00024 ATGCAAATATCTGAGAGGCATCCAAACCAAGCTGGTATCATCCAATTCTACCACCAACCTGTCCATAGCATGTATCAAATGCTACAAAGCAATTTATGCCACAATATCCACCATGATAGTATCATGAAGGGAACCAATGTTTCTTTTGAATCCTGCAAGGATCAATACTTTACCCTGAACTCATCCCCAGCAACCACTGACCTCATAGGCTGTGAAACTGATGATTCCCCTTCCTATGCCAGTGGATTATCTTCTAATAGGAGCCCATTTTCTCCACAAGTCTCTCAGTCATGCTATTCAGATAACCACCACTCATCCGACAACACCTATGGCTCGCCAAATAGCGGCTACTCTAGTGTTGATGATGGGAATGAATGGAAGAACAAGCTCAGAGAACTGGAGATTTCATTGTTGGAGCCTAATGAATCAGATGCTGCTGACAGTTGTGACAACTGTGTCCACGGTGGCCTCACCACAGCCTCTCCAACAATTGAATATGATTGGGAGCAGATTGTGCAGATGATTCCAAAGTTAGACCTGAGAGATGTGCTGCTTCGATGTGCGCAGGCTGTGTCTGATGATGATATAGCCACAGCAATTGGCTGGATGGATAATGTGTTGGGGAAGATGGTATCAGTTTATGGGGAACCATTCCAGAGGCTAGGTGCTTACTTGTTGGAGGGGCTAAGAGCAAGGTTGGAGTCATCTGGGAGTATGATATACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAATTAATGAGTTACATGCACATATTGTATCAGATTTGCCCATTTTGGAAGTTTGCATATGTATCTGCAAACGCAGTCATCACAGAAGCAATGGCAAATGAATCCATGATTCACATAATCGATTTCCAAATCACACAGGGCACACAGTGGCATTTACTTATTCAAGCTCTGGCACATAGGCCGGGTGGACCGCCGGCCATTCGCATAACCGGCGTGGATGATTCTCAATCCATTCATGCGCGTGGCGGCGGACTAGAGATTGTTGGACAAAGGCTCTCCGATTTTGCCAGGTCTTGTGGAGTGCCATTCGAGTTCCACATAGCTGCAATGTGTGGCAGCCAAGTTGAGCAAACAAATATAGTGATTCGAGAAGGGGAAGCTCTGGCTGTAAATTTTCCTTATGTTCTGCACCACATGCAGGATGAGAGTGTAAGCACAGAGAACCACAGGGACAGATTGTTGAGATTGGTTAAGAGCTTGTCTCCCAAGGTTGTGACACTTGTTGAGCAAGAATCCAACACCAACACTTCATCTTTCTTCAACAGGTTTGTTGAGATAATGGATTACTACACTGCAATGTTTGAATCAATAGATGCGGCGTGCCCGAGAGATGACAGGAAGCGGTTGAATGCGGAGCAGCACTGCGTGGCGCGGGACATTGTAAACATGGTAGCTTGCGAGGGAGTGGAGAGAGTAGAGAGGCATGAGCTTCTAGGAAAGTGGAGAATGAGATTCTCCATGGCTGGGTTCAGACAGTGCCCATTGAATCCTTATGTGATGGGTGCTGTCCGGAACATGATGAAGGAATTCAATGGGAATTATAGGGTTGATCAGAGAGATGGTGCCATCTATCTTGGATGGATGAGGAGAGCTATGGTTACCTCTTCAGCTTGGTGCTGA 1656 0.4583 MQISERHPNQAGIIQFYHQPVHSMYQMLQSNLCHNIHHDSIMKGTNVSFESCKDQYFTLNSSPATTDLIGCETDDSPSYASGLSSNRSPFSPQVSQSCYSDNHHSSDNTYGSPNSGYSSVDDGNEWKNKLRELEISLLEPNESDAADSCDNCVHGGLTTASPTIEYDWEQIVQMIPKLDLRDVLLRCAQAVSDDDIATAIGWMDNVLGKMVSVYGEPFQRLGAYLLEGLRARLESSGSMIYKSLKCEQPTSKELMSYMHILYQICPFWKFAYVSANAVITEAMANESMIHIIDFQITQGTQWHLLIQALAHRPGGPPAIRITGVDDSQSIHARGGGLEIVGQRLSDFARSCGVPFEFHIAAMCGSQVEQTNIVIREGEALAVNFPYVLHHMQDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSSFFNRFVEIMDYYTAMFESIDAACPRDDRKRLNAEQHCVARDIVNMVACEGVERVERHELLGKWRMRFSMAGFRQCPLNPYVMGAVRNMMKEFNGNYRVDQRDGAIYLGWMRRAMVTSSAWC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120893g00024 551 MobiDBLite consensus disorder prediction 78 123 - -
Stsc120893g00024 551 Pfam GRAS domain family 180 550 IPR005202 -
Stsc120893g00024 551 MobiDBLite consensus disorder prediction 78 122 - -
Stsc120893g00024 551 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 121 545 IPR005202 -
Stsc120893g00024 551 ProSiteProfiles GRAS family profile. 171 551 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120893g00024 Stsc-Chr120893 95631 98439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120893g00024 1 550 GRAS Transcription Factor Family AT4G17230 56.058 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc120893g00024 GRAS 5.5e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120893g00024 - - aip:107636708 993.801