Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120893g00008 ATGTCTTTCTTCCGGGGCGGAGTCTTCCACGGTGGCCCCACCACCGATCACCACCTTCCATCAAAACGCAAACTTGAAGACTCCGGTCCCCTCGCCGATGACAGCAACGACCTAATGAGCGACTTAGTGTCGGTCAGAATGAGGAAAGACGAAGGAGGAGCTGTCAATTCATGGTCCCCAATCAGAACCCCTCTAACCCCTCTTTCCGAACCCCAATCCCAATCCCAATGGGGCCACTTGCAGTTCTTCGTTCGGATGATGTCCGAGGGCAACACCATGGTCATGCACGCTTTCCCTGAAGACAGCGTCAAATCCATCCACCAGCGAATTCAGAACATCAAGGGTATTCCCGTTCATGAACAGAGACTGATCTACATGGGCAAGCAGCTTCAATGCGAGAAGACTCTTGCTGAGTGTTCCATCCAAAACGACGCCAGCCTCCAGTTAGTTGGTCGTATGCGCAGCACGGAGCACCCTCATGCCTGGCAGGTCATGAACGACATGACTTCTGTTGTGTATCGAATGTGCAGAGGGGAATCTCTCTCTGATCCCCAGAAGACTGTTAAAGGCCTCATTGACAGTTACCTCAACATGACCCCTAGAGACTCTGACTCTGCTTTTGGCTACTTCCAGATTTTCATGTCTTGTTCTGCTCCCTCTATCTTGGTCATGCTCTACCTCTCTCCCTTTTCAGGTAACAAGGACTGTGCTGACTCTTCTGTTAGGCATTTTGTCAATTCTTGTCGTAGTACATTGTCTGAGGAATTGCATAGCCAGTTTGCACTTGTGGTCTTAGAGTTTTGCAAATTGCTTAGGAGGCTGCACTCTGATGACCCTTTGTATATGTTTTGTCGGAGTACTTTGGGATCCTTGTTGGAAACTGATTGTGTTTGCTGTGGTACTGCTGAGGAGGATGTTAAAGGCTTGATTTTGATTCAAGATATATTCCCATTCGTCCGTGAGCTTGCTAATAGCTTGTTGAGCGATTTGGATTTGAGTATGGAATCCCCAACCTTTGCTGGCCCATTGTACAGTGATGTTAGAGATCTCAGGGCATTCTTGGTCCCTTTGAGATCCGGAATCAGTGTGCAACAATCACTCACAGGTTCTGCAACGGGTGAGGAGCGCCACACTGATGCTGTTCTCACAGAAGAGATTGAATACCTTCATTTTTTATACATTGAGTTGCTGAGCAAGATGGATGAATGCCTTCAGAAAATGGATAGTAGCTTAGCAGACCAGGAGATAACAGATTGGGATACTCGATATAATGCGTGGTCTCAGTATCTTTCTATTTTGAAGGAATTGTATCAAATCTCTAAGCTTTATGACGGTGCAGAAGAGGAACTTTGGAATGTTTTAACTCGCCAAAGAAGTGCAGTGTGTCTATTGATTGTTAGGTATGCAAAGAGGAATGATGAACATCATTGGATCCTTGAACGCAAGTGCGTGACGAATTTTGAATCAAGAAGGCATTTGGCGCTGCTAATGCTGCCAGAGGTAAAAGATGACTATGAGGAGTTGCATGAGATGCTCATTGATAGGTCTCAGTTATTGGCTGAATCTTTCCAATACATAGGACGTGTGGAACCAGAATCTCTACATGGGGGCTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGGCCAGGTGTACTTAGGGAGTGGTTTCTTTTGGTTTGTCAAGAAATATTCAATCCGCAAAATGCTCTTTTTGCCGCATGCCCAAATGACAAACGAAGATTTTTCCCGAATCCTGCATCCAAAGTAGATCCTCTGCACCTTGATTACTTCCGCTTCTCTGGTCGAATTATTGCATTGGCTTTGATGCATGGGGTGCATGTTGGTATAGTTTTTGATCGTGTGTTTTTCCAGCAATTAGCCGGAAAAGAAATTACTTTAGAAGACATAAAGGATGCAGATCCACACTTGTATAGTAGCTACAAGCAAATATTGGAGATGGATCCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAAGAGTTAGGATGCAGGGAAGTGGTTGAGCTGTGCCCGGGTGGGAAGAACCTCGTTGTAAATAGTAAGAACAGGGAGAATTATGTTGATCTTCTTATACAGGATCATTTTGTAACATCTATATCTGAGCAGGTGTCACAATTTGCCAAAGGCTTTGGTGATATTCTCTCAAACTCAAGCCTTGAGTCATCATTCTTTCAAAGTTTAGACCTTAAAGATCTTGACTGGATGCTGCATGGGAGTGAAGATATCATTTCTGTTGAGGACTGGAAAGCACATACTGAGTATCAAGGCTATCAAGAGACAGATCCTGAGATATCTTGGTTTTGGGAGATTCTTGGGAGAATGACAGATGAACAGAGGAGGGTACTTCTGTACTTCTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTCCGTGGTTTGGCTTCGAGTCTCTCCATTTACAGGTCCCCTGAACATGATGACCACCTTCCGTCATCTCACACATGCTTTTACCGGCTGTGTGTACCAGCCTATTCCACGATGGCCATTATGCAAGATCGTCTTAGAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2613 0.4478 MSFFRGGVFHGGPTTDHHLPSKRKLEDSGPLADDSNDLMSDLVSVRMRKDEGGAVNSWSPIRTPLTPLSEPQSQSQWGHLQFFVRMMSEGNTMVMHAFPEDSVKSIHQRIQNIKGIPVHEQRLIYMGKQLQCEKTLAECSIQNDASLQLVGRMRSTEHPHAWQVMNDMTSVVYRMCRGESLSDPQKTVKGLIDSYLNMTPRDSDSAFGYFQIFMSCSAPSILVMLYLSPFSGNKDCADSSVRHFVNSCRSTLSEELHSQFALVVLEFCKLLRRLHSDDPLYMFCRSTLGSLLETDCVCCGTAEEDVKGLILIQDIFPFVRELANSLLSDLDLSMESPTFAGPLYSDVRDLRAFLVPLRSGISVQQSLTGSATGEERHTDAVLTEEIEYLHFLYIELLSKMDECLQKMDSSLADQEITDWDTRYNAWSQYLSILKELYQISKLYDGAEEELWNVLTRQRSAVCLLIVRYAKRNDEHHWILERKCVTNFESRRHLALLMLPEVKDDYEELHEMLIDRSQLLAESFQYIGRVEPESLHGGLFMEFKNEEATGPGVLREWFLLVCQEIFNPQNALFAACPNDKRRFFPNPASKVDPLHLDYFRFSGRIIALALMHGVHVGIVFDRVFFQQLAGKEITLEDIKDADPHLYSSYKQILEMDPDFIDSDALGLTFVREVEELGCREVVELCPGGKNLVVNSKNRENYVDLLIQDHFVTSISEQVSQFAKGFGDILSNSSLESSFFQSLDLKDLDWMLHGSEDIISVEDWKAHTEYQGYQETDPEISWFWEILGRMTDEQRRVLLYFWTSVKYLPVEGFRGLASSLSIYRSPEHDDHLPSSHTCFYRLCVPAYSTMAIMQDRLRVITQEHIGCSFGTW 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120893g00008 870 SUPERFAMILY Hect, E3 ligase catalytic domain 507 856 IPR035983 GO:0004842
Stsc120893g00008 870 FunFam E3 ubiquitin-protein ligase UPL5 754 869 - -
Stsc120893g00008 870 MobiDBLite consensus disorder prediction 53 72 - -
Stsc120893g00008 870 Gene3D Hect, E3 ligase catalytic domain 630 712 - -
Stsc120893g00008 870 Gene3D Hect, E3 ligase catalytic domains 512 740 - -
Stsc120893g00008 870 Gene3D - 72 171 - -
Stsc120893g00008 870 ProSiteProfiles Ubiquitin domain profile. 80 156 IPR000626 GO:0005515
Stsc120893g00008 870 MobiDBLite consensus disorder prediction 12 37 - -
Stsc120893g00008 870 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 73 168 - -
Stsc120893g00008 870 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 81 868 - -
Stsc120893g00008 870 ProSiteProfiles HECT domain profile. 530 870 IPR000569 GO:0004842
Stsc120893g00008 870 MobiDBLite consensus disorder prediction 16 31 - -
Stsc120893g00008 870 Gene3D Hect, E3 ligase catalytic domain 753 869 - -
Stsc120893g00008 870 PRINTS Ubiquitin signature 133 154 IPR019956 -
Stsc120893g00008 870 PRINTS Ubiquitin signature 91 111 IPR019956 -
Stsc120893g00008 870 PRINTS Ubiquitin signature 112 132 IPR019956 -
Stsc120893g00008 870 Pfam HECT-domain (ubiquitin-transferase) 559 862 IPR000569 GO:0004842
Stsc120893g00008 870 SUPERFAMILY Ubiquitin-like 81 169 IPR029071 -
Stsc120893g00008 870 CDD HECTc 509 868 IPR000569 GO:0004842
Stsc120893g00008 870 Pfam Ubiquitin family 83 154 IPR000626 GO:0005515
Stsc120893g00008 870 SMART hect_3 528 868 IPR000569 GO:0004842
Stsc120893g00008 870 SMART ubq_7 80 152 IPR000626 GO:0005515
Stsc120893g00008 870 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 630 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120893g00008 Stsc-Chr120893 25061 30264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120893g00008 80 154 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 1.58e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120893g00008 - - gmx:100789233 1268.45