Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120892g00023 ATGGAACCCCTATGTGAATTTTGTGGTGTTGTAAGAGCTGTTGTGTATTGCAACTCGGATTCTGCACGCCTATGCTTGAACTGTGATGCATCTGTGCACTCTTCCAATCCTCTTTCAAGAAGACATGCGCGTTCTCTCCTCTGTGATCACTGCTATTCCCAATCAGCTGTTATCCGATGTGTGGATCACAACATGTGTGTGTGTGAAGCCTGCGAATGGAATCGCAACGAGTGCTTGTTCATGGGACACGGTCGCCTGCTTTTGAAGTCCTATACTGGTTGTCCCTCTTTTGGAGACTTGTCTAGGCTTTGGTCCTTTGTGTTTGATGCTAACTCCTCATGTGGTGGTGGTGGTTTGGAACCAATTAGTACTACAGTTTCTGGAAATGGAAGCTGCACAAGCAAGTGTGTGGAGCAACATGATAATGATGATGATTTATTTGAGCCTTGGATGGATCTGTCTCCCATTCTTCCATCAAATCCAGATAGCATGCAATTCTGCAAAGATCAAGAAGCACTTTTCTTCCCTCCAGAATCAAACCAGCCAAAGGGGTGTCCTAATTTCAAGGACCTAGGAATTGAAGAGGGAAATGGTGTATGTAAAGGTCTCACTGTGGATGATGTTATTCAGTTAAACTTTGAAAATGCTGATGACATATTTGGCTGCTTTAAGGATGGAGGATTAGACTGTTTATTAATGGATAATAACATATCAGTGACAGAATCTAAATGTCTTACCGAGAGTTCCATTGAGGCATCATCATCAGTCCAACAAGATTGTAAGACCTTTCAATCTGCACTTGTGAATCCTATTTACAACAGAGACATCAATCTTGGATTCCCTCATCAGGGCCAAGTTCATTCGAGCACATCGATGCAGCTATCCACCATTACTGGAGACAGCAGTGCTACTGATTTAGATTGTGAGTTGTCATCAATGGTTCTCACAGGTGAGGAATCAACTTTGGAGGGTACATGCCCACAGAGAAGGGAGAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAAGGTTTGGCAAACAAATAAGATATGCATCTCGGAAGGCAAGGGCCGAGGCTAGAAAGCGAGTGAAAGGTAGATTTGTGAAAGCAGGAGAAGAATATGATTATGACCCTCTGCTGCAGAATAAGCCTGAATAA 1164 0.4278 MEPLCEFCGVVRAVVYCNSDSARLCLNCDASVHSSNPLSRRHARSLLCDHCYSQSAVIRCVDHNMCVCEACEWNRNECLFMGHGRLLLKSYTGCPSFGDLSRLWSFVFDANSSCGGGGLEPISTTVSGNGSCTSKCVEQHDNDDDLFEPWMDLSPILPSNPDSMQFCKDQEALFFPPESNQPKGCPNFKDLGIEEGNGVCKGLTVDDVIQLNFENADDIFGCFKDGGLDCLLMDNNISVTESKCLTESSIEASSSVQQDCKTFQSALVNPIYNRDINLGFPHQGQVHSSTSMQLSTITGDSSATDLDCELSSMVLTGEESTLEGTCPQRREKAKMRYNEKKKTRRFGKQIRYASRKARAEARKRVKGRFVKAGEEYDYDPLLQNKPE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120892g00023 387 Pfam CCT motif 330 372 IPR010402 GO:0005515
Stsc120892g00023 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 375 - -
Stsc120892g00023 387 SMART bboxneu5 1 47 IPR000315 GO:0008270
Stsc120892g00023 387 CDD Bbox1_BBX-like 4 47 - -
Stsc120892g00023 387 ProSiteProfiles CCT domain profile. 330 372 IPR010402 GO:0005515
Stsc120892g00023 387 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120892g00023 Stsc-Chr120892 134697 136106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120892g00023 1 380 C2C2-CO-like Transcription Factor Family AT3G21880 40.253 2.99e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc120892g00023 CCT 4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120892g00023 - - adu:107461934 501.516