Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120892g00020 ATGGAGGCTACAGACAACCTAAATGAACGGTTTGTCATCGGAAGAGGAGCCCATGGAGTTGTCTACAAAGCCCTGGTGGCTCCTAACAAGGCTTTTGCTGTGAAGAAGTTGGGATTTGGTGCAAGCACAAGTCAGAAGTTGAGCTTGGAGAGAGAGATCAAGACCCTCGGAAGAATCAGGCATCGAAATCTGCTGAAAGTAGAAGACTTCTGGTTGAGAAAAGATTTTGGACTAATCTTGTATAGGTACATGCCAAATGGGAGCCTCCATGATGTGTTGCATGAAAAGAATCCAAGAGCATGCTTAGAATGGATGGTGAGGTATAAGATAGCTCTTGGGATTTCTCATGGATTAGCCTATCTCCATCATGATTGTGATCCTCCCATAGTACACCGAGACATCAAGCCGAAGAATATACTTCTGGACTCTGATATGGAGCCTCATATCGCTGACTTTGGCATGGCCAAACTGTTGGAGGAGTCTGAGTCTGAGTCCTCATCTCTTGCCCTTGGCACAATTGGTTATATTGCACCAGAGAGTGCATATGCAACTACAGCTAGCAGGGAGTCAGACGTGTATAGTTTCGGGGTAGTCTTGCTTGAGCTCATAACCAGAAAGAAGGCAGCAGATGATGGTGATTTGGTGGCTTGGGTTGGATCCCTCTGGAGAGAAACAGCTGAAATTGGCCACATTGTGGATTCAGAGCTTGCACAAGAGTTCATTGACACCCAGGTGATGGAGCAAGTTACCAAAGTGCTTATGGTGGCTCTCAGATGCACTCAGCAGGATCCCCACAGCAGACTCCCAATGACACTTGTTACCAATCTCTTATCAGATGCAAATCCCTCAAAAACTAATACTAATACTAAGGGCTAG 876 0.4589 MEATDNLNERFVIGRGAHGVVYKALVAPNKAFAVKKLGFGASTSQKLSLEREIKTLGRIRHRNLLKVEDFWLRKDFGLILYRYMPNGSLHDVLHEKNPRACLEWMVRYKIALGISHGLAYLHHDCDPPIVHRDIKPKNILLDSDMEPHIADFGMAKLLEESESESSSLALGTIGYIAPESAYATTASRESDVYSFGVVLLELITRKKAADDGDLVAWVGSLWRETAEIGHIVDSELAQEFIDTQVMEQVTKVLMVALRCTQQDPHSRLPMTLVTNLLSDANPSKTNTNTKG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120892g00020 291 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 278 - -
Stsc120892g00020 291 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
Stsc120892g00020 291 SMART serkin_6 7 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120892g00020 291 Pfam Protein kinase domain 12 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120892g00020 291 Gene3D Transferase(Phosphotransferase) domain 1 84 290 - -
Stsc120892g00020 291 FunFam Serine/threonine-protein kinase-like protein CCR4 84 291 - -
Stsc120892g00020 291 SUPERFAMILY Protein kinase-like (PK-like) 3 276 IPR011009 -
Stsc120892g00020 291 ProSiteProfiles Protein kinase domain profile. 7 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120892g00020 291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Stsc120892g00020 291 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120892g00020 Stsc-Chr120892 123009 124049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120892g00020 1 280 Receptor kinase-like Gene Family AT1G73080 54.639 1.55e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc120892g00020 Pkinase 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120892g00020 - - gmx:100778035 406.757