Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120892g00018 ATGACACTCATTCATTCAATGGAGGAACCAATTTGCCCAATCGACTCCACCTGCCAAACTCAAATCTCTGCTCTTCTCTCTCCTTCCTCCACTCTTCACCTTCAGGAATATTATCACACCCTTTTGTCTGCAAGGCACTGCAGCTCCATCACTGTCAAACAAGATGCTAACTTTGGCAAAGGGGTATTTGCTGCCATGGACTTCTCTGATGGGGACCTTGTTCTCAGGGACCAAATACTTGTGGGGTCTCAACACTCTTTCAACAAGATTGATTGTTTTGTATGTAGCTTCTGCTTTCGTTTTATCGGTTCCATAGAGCTTCAAATTGGAAGGAGGCTTTACCTGCAGGGATTAAGGGATTCTGAGAGTCATGGCTGTGATGTTGGAAGCTCTTCGGGCTTGTCAAAAAACATCCATGGGATGGATTCATCATCTGATGATGAGGACGAGGGAACTCGGCAATGTGGTTCCAGCAGTTCCAAAGATAAAATTCCTCTCCCTGAAGGTGTTGTGGAATCTTTAATGAATGGTCAACTGAATTTGCCTTTCTCTAAGGAGTTCTCGTTGCCACCAGCGGTTCCATGCCTCGGTGGATGTGGAGAAGCTTACTATTGCAGCACATCATGTGCAGAGGCTGACTGGGAATCTTCACATTCTTTACTATGCACTGGCGAGAGGTCTGATCCAGCACGTAGGGAGGCACTTCTTAAATTCAATAAACATGCTAATGAAACAAATGATATATTCATGCTTGCCGCAAAGGCTATTTCTTACACCGTATTAAGATACCGCAAGTTAAAAGCAAACTTTCTTGAAGGGAAAATGAAATATGATACTTCCGGTGATTCAAACTACTATAATCTCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGATTGCGTTGCATTGCCAGATGATATTGATTCTTCGGATGAAGATTCATTCAGGATGCAAATAAAAGAATTGGCATTCAAGTCACTCCAACTTCTTAAGGCAGCTATATTTGACAAAGAGTGTGAGCCATTATTCTCCCTTGATATTTATGGACACATCATTGGCATGTTTGAGCAGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATGCATTGATGATCTGAAAAATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTTTAGATGCTCTTGGTGAAGACTATTCTGTCTGTTGCCAAGGAACTGCATTTTTTCCTTTGCAAAGCTGCATGAACCATTCTTGTTGTCCTAATGCCAAAGCCTTCAAGAGAGACGAGGATAGGGATGGCCAAGCAACCATAATTGCAGTAAGGTCCATTAGAAAAGGAGAAGAGATAACCATCTCATATGTTGATGAGGACCTTCCTTTTGAAGTGAGACAAGCATCCCTTGCAGACTATGGTTTTAGATGCAGGTGTCCAAAATGCATTGAAGAAGAGCCATAA 1491 0.4212 MTLIHSMEEPICPIDSTCQTQISALLSPSSTLHLQEYYHTLLSARHCSSITVKQDANFGKGVFAAMDFSDGDLVLRDQILVGSQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQGLRDSESHGCDVGSSSGLSKNIHGMDSSSDDEDEGTRQCGSSSSKDKIPLPEGVVESLMNGQLNLPFSKEFSLPPAVPCLGGCGEAYYCSTSCAEADWESSHSLLCTGERSDPARREALLKFNKHANETNDIFMLAAKAISYTVLRYRKLKANFLEGKMKYDTSGDSNYYNLSLLLEAWRPISMGHKRRWWDCVALPDDIDSSDEDSFRMQIKELAFKSLQLLKAAIFDKECEPLFSLDIYGHIIGMFEQNNLDLVVASPVEDYFLCIDDLKNPDKEEAEKITQPILDALGEDYSVCCQGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIAVRSIRKGEEITISYVDEDLPFEVRQASLADYGFRCRCPKCIEEEP 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120892g00018 496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 20 495 IPR044237 GO:0008168
Stsc120892g00018 496 MobiDBLite consensus disorder prediction 126 140 - -
Stsc120892g00018 496 ProSiteProfiles SET domain profile. 48 466 IPR001214 GO:0005515
Stsc120892g00018 496 SMART set_7 48 472 IPR001214 GO:0005515
Stsc120892g00018 496 MobiDBLite consensus disorder prediction 126 165 - -
Stsc120892g00018 496 Pfam MYND finger 194 222 IPR002893 -
Stsc120892g00018 496 Gene3D SET domain 389 495 IPR046341 -
Stsc120892g00018 496 Pfam SET domain 372 465 IPR001214 GO:0005515
Stsc120892g00018 496 Gene3D - 141 227 - -
Stsc120892g00018 496 SUPERFAMILY HIT/MYND zinc finger-like 197 223 - -
Stsc120892g00018 496 CDD SET_SMYD 414 491 - -
Stsc120892g00018 496 SUPERFAMILY SET domain 46 491 IPR046341 -
Stsc120892g00018 496 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120892g00018 Stsc-Chr120892 107716 111545 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc120892g00018 SET 6.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120892g00018 - - gmx:100803651 769.229