LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120892g00017	ATGGCAAGGCAATTAGGGTACTTGAGAGTTTTGGTTGTTTGTGTGGTGGCATCAATTATTGCAACAACACAAGCTCAGTTGCAGCTTGGTTTCTATGCTAATAGCTGCCCAAATGCTGAGAAAATTGTTTCTGAGTTTGTGAATGAGCACATCCACAATGCTCCTTCACTTGCAGCTGCATTGATAAGAATGCATTTTCATGATTGTTTTGTCAGGGGGTGTGATGGATCAGTGCTTCTGAACAAAACAAACAACCAAGCTGAGAAGAATGCTCCACCAAACTTGACAGTGAGAGGCTTTGACTTCATTGAGAGAATAAAGAGCCTTGTTGAAGCTGCATGCCCTGGTGTTGTTTCTTGTGCTGATATCTTAACTTTGGCTGCCAGAGACTCCATTGTTGCCACTGGTGGTCCCTCATGGCAAGTTCCAACAGGTAGAAGGGATGGTTTAGTCTCTAATTTGTCAGAAGCCTCAAGCAACATTCCATCACCATTTGACAACTTCACCACCCTGCAAACTAAGTTTAACAGAGTTGGACTTGATCTCAATGACTTAGTCATCTTATCTGGTGCACACACAATTGGTGTTTCTCACTGCTCATCAGTCAGAAACCGTTTGTACAACTTCACTGGGAAGCTGGATCAAGACCCTGCACTAGACAGTGAGTATGCACAAAACCTGAAGAAATTCAAGTGCAAGAGCATCAATGACAGCACCACTTTGATTGAGATGGACCCTGGTAGCCGCAAGACCTTTGATCTTGGTTACTATAACCAAGTTGTTAAGAGAAGAGGCCTATTCACCTCAGATTCACAGTTGTTGGCCAACAGTGTTACAAAGTCTCTGGTGAACCAATTGCTTCAAGGCTCACTTCAGAATTTCTATGCTCAGTTTGCAAAGTCTATGGAGAAAATGGGAAGAATTAATGTCAAGACAGGGACACAAGGTGAAATCAGGAAGCAATGTGCATTGGTAAATAGCTAA	984	0.4278	MARQLGYLRVLVVCVVASIIATTQAQLQLGFYANSCPNAEKIVSEFVNEHIHNAPSLAAALIRMHFHDCFVRGCDGSVLLNKTNNQAEKNAPPNLTVRGFDFIERIKSLVEAACPGVVSCADILTLAARDSIVATGGPSWQVPTGRRDGLVSNLSEASSNIPSPFDNFTTLQTKFNRVGLDLNDLVILSGAHTIGVSHCSSVRNRLYNFTGKLDQDPALDSEYAQNLKKFKCKSINDSTTLIEMDPGSRKTFDLGYYNQVVKRRGLFTSDSQLLANSVTKSLVNQLLQGSLQNFYAQFAKSMEKMGRINVKTGTQGEIRKQCALVNS	327

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120892g00017	327	PANTHER	PEROXIDASE 25-RELATED	16	319	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Stsc120892g00017	327	ProSiteProfiles	Plant heme peroxidase family profile.	26	326	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Stsc120892g00017	327	PRINTS	Haem peroxidase superfamily signature	184	199	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Stsc120892g00017	327	PRINTS	Haem peroxidase superfamily signature	245	260	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Stsc120892g00017	327	PRINTS	Haem peroxidase superfamily signature	58	72	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Stsc120892g00017	327	PRINTS	Haem peroxidase superfamily signature	118	135	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Stsc120892g00017	327	PRINTS	Haem peroxidase superfamily signature	136	148	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Stsc120892g00017	327	Pfam	Peroxidase	43	286	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Stsc120892g00017	327	ProSitePatterns	Peroxidases active site signature.	58	69	IPR019794	GO:0004601
	Stsc120892g00017	327	FunFam	Peroxidase	30	173	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120892g00017	Stsc-Chr120892	104821	106836	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120892g00017	19	327	Peroxidase	AT1G05260	68.932	1.17e-164	460

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120892g00017	K00430		-	gmx:102660930	503.442

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