Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120892g00012 ATGGATCACTCTTCTTCTTCTCAAGTTTCTGCAAACTCTACAGAACAAGTGTCCGATCGAGCTTCCAAGGTTGAGTTTTCAGAGGATGAGAAAACTCTTATTTCCAGGATGTATAAACTTGTTGGGGACAGGTGGTCTTTAATTGCTGGAAGAATTCCCGGAAGAACAGCTTATGAAATAGAGAAGTACTGGACTTCAACATACTCATCAAGAAACCAAGAATAA 225 0.3956 MDHSSSSQVSANSTEQVSDRASKVEFSEDEKTLISRMYKLVGDRWSLIAGRIPGRTAYEIEKYWTSTYSSRNQE 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120892g00012 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 72 IPR017930 -
Stsc120892g00012 74 Gene3D - 25 74 - -
Stsc120892g00012 74 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120892g00012 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 19 71 - -
Stsc120892g00012 74 SMART sant 22 70 IPR001005 -
Stsc120892g00012 74 Pfam Myb-like DNA-binding domain 23 65 IPR001005 -
Stsc120892g00012 74 ProSiteProfiles Myb-like domain profile. 18 68 IPR001005 -
Stsc120892g00012 74 CDD SANT 25 64 IPR001005 -
Stsc120892g00012 74 MobiDBLite consensus disorder prediction 1 25 - -
Stsc120892g00012 74 FunFam MYB-like transcription factor 25 67 - -
Stsc120892g00012 74 SUPERFAMILY Homeodomain-like 24 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120892g00012 Stsc-Chr120892 85802 86325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120892g00012 17 71 MYB Transcription Factor Family AT5G14750 43.636 4.36e-14 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc120892g00012 Myb_DNA-binding 6.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120892g00012 - - adu:127744146 124.405