Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120892g00011 ATGAACGACCTTCTTACTGATTCGTTTGTTGGTGAAAGTAATCATGGTCAGCCTTCAAGACAAGGTGATATTGAAATGGGAATGCAGGTTCAGAGAAACAACTCTGATTTGGGAATGGAAGCTTTTAATAAGCAGGTCCATGAGGTCGACAAACAAATTGATAAGCTCGCTGGGCTACTTCAAAAGCTAAAGGAAGCTAATGAAGAATCAAAAGCTGTTACAAAAGCATCTGCTATGAAAGCTATCAAGAAGAGGATGGAGAAGGATATTGATGAAGTTGGAAAAATTGCACACGGTGTCAAAACAAAAATAGAAGCTATAAACAGAGATAACCTAAACAACAGAAAAAAGCCTGGTTGTGAGAAGGGGACGGGTATTGACAGAGCTAGGATGAATATGACAAATGCCTTAACTAAAAGGTTCAAGGATCTAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTTGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATTGAAACTGGAAATAGTGAGCAAATCTTCCAGAAGGCAATTTTAGAAGCAGGCCGAGGACAGGTTGTAAGCACAGTAGAAGAAATTCAGGAAAGACATGATGCTGTGAAAGAAATTGAGAAGAAGCTTCTTGATTTGCACCAGATTTATCTCGACATGGCAGTCTTAGTTGACGCTCAGGGGGAGATTTTAGACAACATCGAAAGCCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACAACGGCACTTCAAGGTGACAAACGCAACTGA 825 0.4061 MNDLLTDSFVGESNHGQPSRQGDIEMGMQVQRNNSDLGMEAFNKQVHEVDKQIDKLAGLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLNNRKKPGCEKGTGIDRARMNMTNALTKRFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQGDKRN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120892g00011 274 CDD SynN 39 196 IPR006011 GO:0016020
Stsc120892g00011 274 FunFam Syntaxin 132 34 163 - -
Stsc120892g00011 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Stsc120892g00011 274 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Stsc120892g00011 274 FunFam Syntaxin 132 202 274 - -
Stsc120892g00011 274 Gene3D - 35 240 - -
Stsc120892g00011 274 MobiDBLite consensus disorder prediction 1 26 - -
Stsc120892g00011 274 PANTHER SYNTAXIN 35 269 IPR045242 -
Stsc120892g00011 274 CDD SNARE_syntaxin1-like 208 269 - -
Stsc120892g00011 274 SMART tSNARE_6 204 271 IPR000727 -
Stsc120892g00011 274 Coils Coil 46 76 - -
Stsc120892g00011 274 SMART SynN_4 34 160 IPR006011 GO:0016020
Stsc120892g00011 274 SUPERFAMILY t-snare proteins 37 264 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120892g00011 Stsc-Chr120892 75648 81095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120892g00011 1 268 SNARE and Associated Proteins AT3G03800 61.940 2.05e-111 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120892g00011 K08486 - gmx:100800991 482.641