Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120892g00007 ATGCCAGCGGGTATTATGATTCCGGCGAGAAACATGATGTCATCGATGATCGGAAGGAACAACAATGGTGGTGGGTTTGGATCTTCGTCTTCCTCTGGACTCTCTCTTGGCCAGATTGAGAATAACCACAACAAGGGATCCATGGATATGTTTCAAGCTAACATGATGGAAGGTGGTCAATTGCACCACCACGGTCTCGACATGGCTCAGAACACGCCGGACAGCGACATCCCTAGAATCCGTGAGGACGAGTTCGACAGCGCCACCAAGTCTGGCAGCGAGAACCAGGAAGGTGGCGCTTCCGGCGAGGACCAAGATCCCCGCCCTAACAAGAAGAAGCGCTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCATTCTTTAAGGAGTGTCCGCACCCGGATGACAAGCAAAGGAAGGAGCTAAGCCGTGAGTTAGGGCTAGAGCCATTGCAGGTGAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACGCAACATGAGAGGCACGAGAACACGCAGCTAAGGACAGAGAACGAGAAGCTGAGAGCGGATAACATGAGGTATAGGGAGGCTCTTAGCAATGCCTCTTGTCCCAACTGCGGTGGACCCACCGCCATTGGAGAAATGTCTTTTGATGAACATCACTTGAGGCTTGAAAATGCCAGGCTCAGGGAAGAGATAGATAGGATTTCTGCCATTGCTGCAAAGTACGTGGGGAAGCCAGTGGTGAACTACCCACTCCTTTCATCCTCAACAATGCCAGCACGTCCGCTAGAGCTCGGCATTGGTGGTTTCGGTGGCCAATCCGGCGGCATGGGTGGCGGTGACATGTACGGAGGAGGAGGAGCGGGAGATCTTCTGAGGCCAATGAGTGGGCCCAGTGAAGCAGACAAGCCGATGATAATTGAGCTGGCAGTGGCTGCGATGGAGGAGCTAATTGGGATGGCACAGATGGGTGAGCCTCTGTGGCTAACCACAATTGACGGTGCCACCGCGGTGCTTAACGAGGATGAATATGTGAGATCGTTCCCCCGTGGAATCGGACCCAAACCTAATGGATTCAAGTGTGAAGCTTCACGTGAAACCGCTGTTGTCATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAATTTTCTCCGGAATAGTTTCAAGAGCGGCGACACTGGAAGTTCTATCAACAGGGGTGGCAGGGAACTATAACGGCGCCTTGCAAGTGATGACGGCGGAGTTGCAAGTCCCTTCGCCGCTTGTGCCAACGAGAGAGAGCTATTTCGTAAGGTATTGTAAGCAGCACGCGGACGGCACGTGGGCAGTGGTGGATGTGTCGTTGGACAATCTGCGGCCGAGTCCTTCGGCGAGGTGCAGGAGAAGGCCTTCTGGTTGCTTGATTCAAGAAATGCCCAACGGCTACTCTAAGGTCATATGGGTTGAGCACGTTGAAGTTGATGACAGAGGTGTTCATAATCTATACAAGCAGATTGTTAGCTCTGGTAATGCCTTCGGTGCAAAACGCTGGATTGCCACCTTGGATCGGCAGTGTGAGAGGCTGGCTAGTGCCATGGCTACTAACATTCCAACTGTTGATGTTGGAGTGATAACTAACCAAGAAGGGAGGAAGAGCATGCTCAAACTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGCGTGAGTGCCTCAACTGCCCACACGTGGACAACGCTCTCTGGAACGGGTGCTGATGACGTCAGAGTCATGACACGTAAGAGTGTTGATGACCCCGGCAGGCCACCTGGCATTGTTCTCAGTGCTGCTACTTCTTTCTGGCTCCCAGTCCCTCCTAAACGGGTCTTTGAATTCCTCCGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCGAACGGTGGAGTTGTCCAAGAAATGGCGCACATTGCTAATGGAAGAGATACCGGAAATTGCGTCTCTCTCCTTAGAGTCAATAGTGCGAATTCGAGCCAGAGTAACATGTTGATATTGCAAGAGAGTTGCACAGATTCAACTGGGTCGTTTGTGATCTATGCTCCTGTGGATATTGTTGCCATGAATGTGGTTCTGAACGGAGGGGATCCTGACTATGTGGCGCTTCTTCCTTCCGGCTTTGCGATTCTTCCGGATGGGACAACTCCCCACGGAGGTGGCGAAGCCGGTGGACATGGTGGTTCTCTCTTAACAGTTGCATTTCAAATACTGGTTGACTCAGTTCCAACCGCCAAGCTCTCTCTTGGCTCTGTTGCAACTGTTAACAACCTTATTGCTTGCACTGTTGAGAGAATTAAGGCTTCCCTATCCGGGGAAGCTCCTTCATAA 2361 0.515 MPAGIMIPARNMMSSMIGRNNNGGGFGSSSSSGLSLGQIENNHNKGSMDMFQANMMEGGQLHHHGLDMAQNTPDSDIPRIREDEFDSATKSGSENQEGGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSSSTMPARPLELGIGGFGGQSGGMGGGDMYGGGGAGDLLRPMSGPSEADKPMIIELAVAAMEELIGMAQMGEPLWLTTIDGATAVLNEDEYVRSFPRGIGPKPNGFKCEASRETAVVIMNHVNLVEILMDVNQWSTIFSGIVSRAATLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQIVSSGNAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTPHGGGEAGGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEAPS 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120892g00007 786 Gene3D - 99 186 - -
Stsc120892g00007 786 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Stsc120892g00007 786 CDD homeodomain 112 170 IPR001356 GO:0003677
Stsc120892g00007 786 ProSiteProfiles START domain profile. 298 530 IPR002913 GO:0008289
Stsc120892g00007 786 SUPERFAMILY Bet v1-like 300 529 - -
Stsc120892g00007 786 FunFam Homeobox-leucine zipper protein HDG1 99 185 - -
Stsc120892g00007 786 Coils Coil 175 195 - -
Stsc120892g00007 786 SUPERFAMILY Homeodomain-like 101 169 IPR009057 -
Stsc120892g00007 786 CDD START_ArGLABRA2_like 302 526 - -
Stsc120892g00007 786 Pfam Homeodomain 112 167 IPR001356 GO:0003677
Stsc120892g00007 786 Gene3D - 351 524 IPR023393 -
Stsc120892g00007 786 Pfam START domain 308 527 IPR002913 GO:0008289
Stsc120892g00007 786 SUPERFAMILY Bet v1-like 546 777 - -
Stsc120892g00007 786 SMART HOX_1 110 173 IPR001356 GO:0003677
Stsc120892g00007 786 MobiDBLite consensus disorder prediction 85 120 - -
Stsc120892g00007 786 FunFam Homeobox-leucine zipper protein GLABRA 2 307 526 - -
Stsc120892g00007 786 SMART START_1 307 527 IPR002913 GO:0008289
Stsc120892g00007 786 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Stsc120892g00007 786 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 110 780 IPR042160 -
Stsc120892g00007 786 MobiDBLite consensus disorder prediction 20 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120892g00007 Stsc-Chr120892 39330 43431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120892g00007 50 783 Homeobox Transcription Factor Family AT1G05230 78.649 0.0 1169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc120892g00007 START 8.1e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120892g00007 K09338 - gmx:100809556 1326.23