Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120892g00003 ATGTATGCAATTGCAGACTTGGTTGATTACTACAGGTGGAGGGAGGTAATAGCCATCTTTGTAGATGATGACAATGGAAGAAATGGAATCTCAGTGTTGGGCGACGCGCTTGCCAAGAAACGTGCCAAGATATCTTACAAGGCTGCATTCCCTCCTGGAGCTGCAATGAGTAACATCAGTGACTTGTTGAATCAGGTGAACCTGATGGAATCACGTGTTTATGTGCTGCATGTTAATCCTGATTCTGGCTTGCAAATCTTTGCACTTGCCAAGAAGATTGGGATGATGACTAGTGGCTATGTGTGGATTGCAACAGATTGGCTTCCTTCTGTGCTGGATTCTATGGAGACAGTTAACACTGACACACTTGATCTGCTACAAGGAGTTGTTGCTCTAAGGCATCACACACCTGACACTGATCTTAAGAAGAGTTTAATCTCAAAGCTGAAGAGCAGAAAGGACAATGAGACATCAGGCTTCAATTCTTATGCATTCTATGCATATGATTCTGTTTGGTTGGCGGCGCGTGCTCTGGATACTTTTCTCAACGAAGGTGGAAACATATCTTTCTCCTCAGATCCTAAGCTGCAAGACACAAACTCAAGCATGCTGCATTTTTCAGCACTCCGTGTGTTTGATGGCGGCGACAAGTTTCTGCAGACAATTCAGAGAACAAACTTCACTGGTGTGAGTGGCCCAGTTCAGTTTGATACAGATAAGAATTTGATTCATCCAGCTTATGACATCATGAATATCGGCGGGTTTGGAACTCGGAGGATTGGTTATTGGTCTAATTATTCAGGTCTCTCAGTTATAGCTCCTGAAGTTTTGTATATGAAACCACCTAACATTTCATCAAGCAACCAGCAACTATATAGTGTTATATGGCCTGGAGAAACAACAGATACACCAAGGGGATGGGTGTTCCCAAACAATGGGAAGCCATTGAGAATCGCGGTGCCTAATAGAGTAAGCTACTTGGAGTTTGTTGGTAAGGACAAGAACCCCCCTGGGGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAAGTTGTTGCCTTATCCTGTCCCAACAGAATATATATTATATGGTCATGGTGATAGAAATCCCAGCTATGATGACCTTACAAATCAGGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATATTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAGCCTTACATGGAATCAGGACTGGTGGTGGTTGTGCCTGTCAAGGAAATCAAGTCAAGCCCTTGGTCCTTTCTAAAGCCATTCACAGCTAAAATGTGGTTAGTTACTGGTGCCTTCTTTGTCTTTGTGGGAGCCGTCGTCTGGATTCTTGAGCACCGGCACAATGAAGAATTCCGCGGTCCGCCAAGGAAACAACTCATAACAGTTTGTTGGTTTAGTTTCTCAACAATGTTCTTCTCACACAGAGAGAACACTGTGAGTGCACTTGGGCGATTGGTGCTACTCATATGGCTTTGGGTGGTTTTAATCATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTTTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAGGCACTCAACCAATTGGAATACAAGAAGGATCATTTGCAAAAAAGTATCTGATAGATGAACTCAACATAGCACCATCTAGGATAGTTACACTGAAAAATATGGAAGCATATGTTGATGCCCTTCAACGCGGACCAAAGAATGGAGGGGTTGTGGCCATTGTTGATGAGCTTCCTTATATTCAGCTCTTCATGTCCAATACCAACTGTAAGTTCAGAACAGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAAAGGGATTCACCCCTTGCTGTTGATTTGTCAACTGCAATCCTTCAACTCTCGGAGAACGGTGAACTGCAAAAGATCCATGACAAATGGCTTTTGAAACAAGACTGCACTGCTCAACTCGACGACCAAGACTCGAATAAACTGTCTCTGAGTAGCTTCTGGGGCCTCTTCCTCATATGTGGCATTGCATGCTTCCTTTCTTTGGTTGTATTCTTTGTAAGAGTGTTCTGTCAATACACCAGATTTAGCCCTGAGCCTGAACGAGTCGATGAGGAAACTCCACGAGACAGCAGGCCTTCTAGAAGGAACCTCAAAAGTACTAGTTTCAAGGACTTGATGGTATTTGTGGATAAGAAAGAAGCAGAAATCAAAGAGATACTTAGGCAGAAGAGTAATAAAAGGAGGAGAAGCCAGAGTCTAGATGAGCAATCTAGTTCATCACCCTCCTAA 2328 0.4313 MYAIADLVDYYRWREVIAIFVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGAAMSNISDLLNQVNLMESRVYVLHVNPDSGLQIFALAKKIGMMTSGYVWIATDWLPSVLDSMETVNTDTLDLLQGVVALRHHTPDTDLKKSLISKLKSRKDNETSGFNSYAFYAYDSVWLAARALDTFLNEGGNISFSSDPKLQDTNSSMLHFSALRVFDGGDKFLQTIQRTNFTGVSGPVQFDTDKNLIHPAYDIMNIGGFGTRRIGYWSNYSGLSVIAPEVLYMKPPNISSSNQQLYSVIWPGETTDTPRGWVFPNNGKPLRIAVPNRVSYLEFVGKDKNPPGVKGYCIDVFEAAIKLLPYPVPTEYILYGHGDRNPSYDDLTNQVAQNNFDAVVGDITIVTNRTRIVDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTAKMWLVTGAFFVFVGAVVWILEHRHNEEFRGPPRKQLITVCWFSFSTMFFSHRENTVSALGRLVLLIWLWVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFAKKYLIDELNIAPSRIVTLKNMEAYVDALQRGPKNGGVVAIVDELPYIQLFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGELQKIHDKWLLKQDCTAQLDDQDSNKLSLSSFWGLFLICGIACFLSLVVFFVRVFCQYTRFSPEPERVDEETPRDSRPSRRNLKSTSFKDLMVFVDKKEAEIKEILRQKSNKRRRSQSLDEQSSSSPS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120892g00003 775 Gene3D - 428 550 - -
Stsc120892g00003 775 Pfam Receptor family ligand binding region 2 252 IPR001828 -
Stsc120892g00003 775 SMART GluR_14 317 659 IPR001320 GO:0015276|GO:0016020
Stsc120892g00003 775 Pfam Ligand-gated ion channel 659 690 IPR001320 GO:0015276|GO:0016020
Stsc120892g00003 775 FunFam Glutamate receptor 1 158 - -
Stsc120892g00003 775 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 735 IPR015683 -
Stsc120892g00003 775 CDD GluR_Plant 314 657 - -
Stsc120892g00003 775 FunFam Glutamate receptor 427 557 - -
Stsc120892g00003 775 SUPERFAMILY Periplasmic binding protein-like II 292 658 - -
Stsc120892g00003 775 Coils Coil 742 769 - -
Stsc120892g00003 775 Gene3D - 134 244 - -
Stsc120892g00003 775 Gene3D - 311 427 - -
Stsc120892g00003 775 FunFam Glutamate receptor 553 661 - -
Stsc120892g00003 775 Gene3D - 551 661 - -
Stsc120892g00003 775 SUPERFAMILY Periplasmic binding protein-like I 2 308 IPR028082 -
Stsc120892g00003 775 PIRSF IGluLR_plant 1 775 IPR017103 -
Stsc120892g00003 775 Gene3D - 2 269 - -
Stsc120892g00003 775 MobiDBLite consensus disorder prediction 753 775 - -
Stsc120892g00003 775 Pfam Bacterial extracellular solute-binding proteins, family 3 336 658 IPR001638 -
Stsc120892g00003 775 FunFam Glutamate receptor 311 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120892g00003 Stsc-Chr120892 14148 17179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120892g00003 1 624 Ion Channels AT1G05200 69.391 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120892g00003 K05387 - gmx:100799912 1184.09