Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120892g00002 ATGTTTGGTGGGGTTGGCTTCAATTTTTGTGCACTACAAAGTATGAAGCCGTTTGTCGTTTCCCACCTTGTGATTTGGACCATCTTTTGTGGTTCTGTTTTCTGCAATAGGCCTGCTAGTGTGAACCTTGGTGCAGTCTTCACCTTCGATTCAGTCATAGGTAGAGCTGCAAAGGTGGCCATGAAAATGGCCGTTGATGATGTCAATGCTAACCCTAGTGTTCTCAATGGGACCAAACTCAACTTGATAATGAAGGATGCTGAGTGCAGTGTCTTTCTGGGAGCAATTGGAGCTTTTCAGGCACTTGAGGAAGGGATTGTAGCAATGGTTGGCCCACAGTCATCTTCCATAGCTCATATGGTGTCTCAAATTGCTGATGCTCTCCAAGTGCCTCTTGTCTCATATGGTGCCACTGATCCTACCCTATCCTCCCTTCAGTTCCCTTACTTTTTTCGTACTATACAAAGCGACTTGGAGCAGATGATTGCAGTAGCTGATCTAATTGAGTTCAACGAATGGAAGGAGGTCATTGCTGTATACTTGGATGATGATTATGGAAGAAATGGGATATCGGCTTTGAGGGATGAACTCGAAAATAGGAGATTGAAGATTGCTCATAAGCTTCCTTTGAGTATTCAGTTTGATTCAAATGAAATCACCACTTTGCTGAACCAATCCAAATCATTCGGTCCCCGGGTGTATGTTGTTCATATCAACCCAGATCCAAAGCTGAGATTCTTCAATATTGCCAGCAAACTTGAAATGATGACCAAAGATTATGTTTGGATAGTCACTGATTGGCTCTTTGCTACCTTAGATTCTTTCTCCCCAGTGAATCAGACTTCTCTCAGTGTTCTCCAAGGAGTTGTTGGTTTTCGTCAGCATATTCCAGATTCCCGAAAGAAGAGAAATTTTGTTTCAAAATGGAGAAATGCACATAAAGGTGTAACAAATGGTGGTTTGAATGCATATGGATACTATGCTTATGATACAATATGGGCAGTTGCGCAATCGATTGACAGATTCATCAAAGTACATAGTAATATTACCTTTGTAGTTAATAATACCAAAAAGCCATCTCACACACAAGGAAATGATCTTCAGCTTGACAAGCTCAAAGGCCTTGCTGGTGGATCTGAGCTGGTCAATATATTATTACAGTCGAATTTTACTGGTGTGACTGGTCGACTTCAGTTTAATTCAAATAGAAATCTCATAAGTGGTGGTTATGATGTTATAAATATTAATCAGAATGCAATGACTACAGTTGGTTATTGGTCTAATTGTTCTGGATTTTCGGTCATCCCAGCAGAAAGTCTTAAAAATAAGAAATGTAAAAGGTTAACTCAAGGTTATAAACTTGGCAATATCACTTGGCCGGGTGGAGGGACAGAAAGACCACGCGGCTGGGTGATTGCTGGTAATGGAAGAGCACTGAGAATTGGAGTACCACGTAGAGTAAGTTTTGTTGAATTTGTGACTGTGAAAGATCATCAAATTCAGGGCTATTGCATTGATGTCTTCAACAAGGCCCGGGTATTTATTCCATATGATGTTCCTTACAATTTCATTCCTGTCGGCGATGGTAAAGAAAATCCGAGCTATGATGCACTTGTGAAAAATGTTGCTGACAATGTATATGATGCAGTTGTTGGAGACATTGCAATTGTGACAAACCGTACACAATATGTGGATTTTTCTCAGCCTTATGCAACATCTGGTCTTGTTATCGTGGCTCCTATCGACAATGCAAGATCAAATGCTTGGGTGTTTCTCCAGCCATTCACAGCTGATATGTGGTGTGTTACTGCTGCTTCATTTGTGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAGTAAATGATGATTTCCGTGGTCCTCCCAAGAGACAACTCGTGACAGCGTTTATGTTCAGCCTCTCAACACTGTTTAAGACAAATCAGGAACGGACGATAAGCTCGCTGTCCAAAATGGTGATGATAGTCTGGCTTTTCCTATTGATGGTGATCACTGCCAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTCTCGTCACCCATCACCGGAATCGATAGCTTGATTTCAAGCAATTGGCCCATTGGATACCAAGTAGGATCTTTCGCGTACAGCTATCTTACAGATAGTCTTTATATATCAAAATCAAGACTCGTTCAGCTAGGCTCTCCGGAGGAATATGCTATAGCTCTGCAAAAAGGGCCATCTAGAGGAGGGGTGGCGGCTGTCATCGATGAGCTTCCTTACGTGGAGCTCTTTCTGTCAAAACAAACCGGGTTCGGTATCATTGGACAGCCATTTACCAAAAGCAGTTGGGGATTTGCTTTTCAAAAAGAGTCTCCTCTGGCCCTCGACATGTCCACGGCGATCCTGAAACTCGCCGAGACTGGAGAGCTTCAGAAGATACATGACAACTGGCTCTGCAAGATGGGTTGCTCTGAAGAAAGGACAAGCAACTCCAAGCCTGACCAACTTCACTTGATTAGCTTTTGGGGTCTGTATCTGTTATGTGGTGCTGTCACTCTCGCTTCGCTTTTGGTGTTTCTTCTGCGAGCGATTCGCCAGTATGCTCGGTTCAAACAGCGGGAAAAGGACATTGCTGTCTCCCCATCATCAGAGCCATCAAGCACTAGCCGCCATTGTTCCCAGGTTCTCATTAACTTCTTCAACTTCATTGATAAAAAGGAAGAGGCCATAAAGAAAATGTTCACTCAGTGTGACAATCCTGAACCCCAAGTCAGATAA 2775 0.4274 MFGGVGFNFCALQSMKPFVVSHLVIWTIFCGSVFCNRPASVNLGAVFTFDSVIGRAAKVAMKMAVDDVNANPSVLNGTKLNLIMKDAECSVFLGAIGAFQALEEGIVAMVGPQSSSIAHMVSQIADALQVPLVSYGATDPTLSSLQFPYFFRTIQSDLEQMIAVADLIEFNEWKEVIAVYLDDDYGRNGISALRDELENRRLKIAHKLPLSIQFDSNEITTLLNQSKSFGPRVYVVHINPDPKLRFFNIASKLEMMTKDYVWIVTDWLFATLDSFSPVNQTSLSVLQGVVGFRQHIPDSRKKRNFVSKWRNAHKGVTNGGLNAYGYYAYDTIWAVAQSIDRFIKVHSNITFVVNNTKKPSHTQGNDLQLDKLKGLAGGSELVNILLQSNFTGVTGRLQFNSNRNLISGGYDVININQNAMTTVGYWSNCSGFSVIPAESLKNKKCKRLTQGYKLGNITWPGGGTERPRGWVIAGNGRALRIGVPRRVSFVEFVTVKDHQIQGYCIDVFNKARVFIPYDVPYNFIPVGDGKENPSYDALVKNVADNVYDAVVGDIAIVTNRTQYVDFSQPYATSGLVIVAPIDNARSNAWVFLQPFTADMWCVTAASFVMIGVVIWILEHRVNDDFRGPPKRQLVTAFMFSLSTLFKTNQERTISSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLISSNWPIGYQVGSFAYSYLTDSLYISKSRLVQLGSPEEYAIALQKGPSRGGVAAVIDELPYVELFLSKQTGFGIIGQPFTKSSWGFAFQKESPLALDMSTAILKLAETGELQKIHDNWLCKMGCSEERTSNSKPDQLHLISFWGLYLLCGAVTLASLLVFLLRAIRQYARFKQREKDIAVSPSSEPSSTSRHCSQVLINFFNFIDKKEEAIKKMFTQCDNPEPQVR 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120892g00002 924 Gene3D - 59 408 - -
Stsc120892g00002 924 FunFam Glutamate receptor 714 821 - -
Stsc120892g00002 924 PIRSF IGluLR_plant 13 923 IPR017103 -
Stsc120892g00002 924 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 877 IPR015683 -
Stsc120892g00002 924 FunFam Glutamate receptor 474 588 - -
Stsc120892g00002 924 Pfam Ligand-gated ion channel 818 849 IPR001320 GO:0015276|GO:0016020
Stsc120892g00002 924 CDD PBP1_GABAb_receptor_plant 42 436 IPR044440 -
Stsc120892g00002 924 Gene3D - 772 824 - -
Stsc120892g00002 924 Pfam Bacterial extracellular solute-binding proteins, family 3 495 817 IPR001638 -
Stsc120892g00002 924 Gene3D - 474 588 - -
Stsc120892g00002 924 SMART GluR_14 480 819 IPR001320 GO:0015276|GO:0016020
Stsc120892g00002 924 Pfam Receptor family ligand binding region 58 417 IPR001828 -
Stsc120892g00002 924 SUPERFAMILY Periplasmic binding protein-like II 457 817 - -
Stsc120892g00002 924 FunFam Glutamate receptor 156 315 - -
Stsc120892g00002 924 CDD GluR_Plant 479 817 - -
Stsc120892g00002 924 FunFam Glutamate receptor 588 726 - -
Stsc120892g00002 924 Gene3D - 156 431 - -
Stsc120892g00002 924 Gene3D - 589 719 - -
Stsc120892g00002 924 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Stsc120892g00002 924 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 142 - -
Stsc120892g00002 924 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Stsc120892g00002 924 SUPERFAMILY Periplasmic binding protein-like I 36 471 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120892g00002 Stsc-Chr120892 6082 10304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120892g00002 15 918 Ion Channels AT2G32400 54.396 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120892g00002 K05387 - gmx:100784247 1357.81