Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120891g00017 ATGGATTGCATCAGAATCAAAAGCTCCTTGTCTCATAGAAATAATTGGAAATATGATGTCTTTGTCAGTTTCAGGGGCGACACTCGATTCAACTTCACTGATCATCTTTTTGCTGCTCTCCACAGACACGGCATACTTGCCTTTAGGGATGATACTAAGCTTGAGAAAGGAGGACCTATATCACCAGGGCTTCTGCAAGCTATTGAAGGATCACAGGTTTTGATTGTAGTCTTCTCAGTGAACTATGCTTCTTCAACATGGTGCTTGCAAGAACTCGCAAAGATAGCTGATTGCAATCAAGTATCAGGACAGCATGTTCTGCCTGTTTTCTATGATGTGAGTCCATCTGAGGTGAGAAGGCAAAGTGGAAATTATGAAAAAGCCTTTATGAAACATGAAGCAAGATTCAAAGGTGATGCAGACATGATGGAGCAAGTTCCAAGATGGAGGGGAGCTTTAACAGAAGTGGCCAATCTCTCTGGCTGGGATGTAAGCGAAAAGTCGCAATCTGCTGAGATTGAAAAAATTGTCAAAGTGGTAACACGCATATTGAGTCCCAAACCATCATCAAGTCTATTTAATGATATAGTTGGGATGCACTCCCCTTTACAAGAACTAGAAAAGCTTCTAGTTTCGGACTCAGATGATGATGATGATGTTCGAGTTGTTGGGATTTGCGGAATGGGCGGTATAGGAAAGTCAACTCTTGCCACTATTTTATATGAAAAAATATCTCATCAATATGATGTTTCATGTTTTGTAGATGATGTTAGTAAAACTTACGTAGTTTATGGTGCACTTGGTGTACAAGAGCAACTTCTTCGTCAAGCTTTCAAGGAAGAAGATTTACTTATATGCAATCTTTCGTTGGGAAATAATCTGATTCAAAATAGGTTATGCCATAGAAAAGTTTTCATAGTTCTTGATAATGTTGAAAAGGGGATTCAGTTGGAGAAGTTGGCTCTAAAACGTGAACGACTAGGTAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAACATATTTTGAGAGAGTATTGA 1041 0.39 MDCIRIKSSLSHRNNWKYDVFVSFRGDTRFNFTDHLFAALHRHGILAFRDDTKLEKGGPISPGLLQAIEGSQVLIVVFSVNYASSTWCLQELAKIADCNQVSGQHVLPVFYDVSPSEVRRQSGNYEKAFMKHEARFKGDADMMEQVPRWRGALTEVANLSGWDVSEKSQSAEIEKIVKVVTRILSPKPSSSLFNDIVGMHSPLQELEKLLVSDSDDDDDVRVVGICGMGGIGKSTLATILYEKISHQYDVSCFVDDVSKTYVVYGALGVQEQLLRQAFKEEDLLICNLSLGNNLIQNRLCHRKVFIVLDNVEKGIQLEKLALKRERLGRGSRIIIVSRDEHILREY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120891g00017 346 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 162 IPR035897 -
Stsc120891g00017 346 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc120891g00017 346 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc120891g00017 346 Gene3D - 10 182 IPR035897 -
Stsc120891g00017 346 Pfam NB-ARC domain 208 342 IPR002182 GO:0043531
Stsc120891g00017 346 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 343 IPR044974 GO:0006952
Stsc120891g00017 346 SMART till_3 17 159 IPR000157 GO:0007165
Stsc120891g00017 346 PRINTS Disease resistance protein signature 298 312 - -
Stsc120891g00017 346 PRINTS Disease resistance protein signature 222 237 - -
Stsc120891g00017 346 Pfam TIR domain 17 188 IPR000157 GO:0007165
Stsc120891g00017 346 Gene3D - 183 346 IPR027417 -
Stsc120891g00017 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 344 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120891g00017 Stsc-Chr120891 135299 136512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120891g00017 18 343 WRKY Transcription Factor Family AT4G12020 27.744 1.05e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120891g00017 - - ahf:112737043 558.14