Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120891g00016 ATGGAAAAGGAAATATTTCTTGATATTGCCTGTTTTTTTTCCGGCAACGATGAAACATACGTGAAAGGTATGTTACATATTCGAGGATTTCATCCTGAGATTGGAATAAGAACTCTCATTGACAAGTCACTCATTACTTGGGATCAGTCGAGCATAGTTATGCATGATCTATTGAGAGAGTTGGGTAGAAATATTGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAGCAGGTTATGGGATCAAAAGGATCTAAGTGATGTTTTGCGTGAAAACAAGGCAGCAAAGAACCTTGAAGCTATAGTTCTACGAAGATATCTTGAAATTAAGGAAGAGTTATATGTTGAAGCTTTATCAAAAATGAGTCGGCTGAAACTACTCATTCTTGGCAAACTGAATTTCTCTGGAAGCCTGCTTTTTCTTTCTAATGATTTGGGGTATCTCTATTGGGAGGGATATCCTTTCACCTATTTGCCATCAAACTTTCAGCCAAATAAACTCGTTAAATTAATCCTACATCATAGCAACATCAAAGAACTTTGGGAGGGAATAAAGGATCTACCTAATTTGACACATATGGAACTATGTCATTCCAAAAATCTTGTAAAGATACCAAATTTATCTCTTGCCCCAAATCTTAAGAGCCTAGATCTTAAAGGATGTGGTAAACTTGTTCACCTTGATGCATCCATTGGTGCTCTAGAAAAGCTTGATTTCTTGAATCTGGAAAACTGCAAAAATCTTGTTAGTATTCCCAACAGCATATTTCATCTTAATTCGCTTCGTTATTTAAATCTATCTGGCTGTTGGAAATTACTTAAATATCAGCTGTTAGAGAAACCAAGGCAAAAGGAGCAGTTTAATACAGTTCAAAGTGTGCAGAGGCGCATGACAGTATGCAAAACTCTTAGAATGCCTCTCCATTTTTTATCTTCTAGAAGGCGTGCCGATTCAGTTGGTTTTCTGTTGACTTCTTTGTCTCATTTCCCAGCTTTGATATATCTTGACATAAGTTTCTGTAATCTAGTTCAAATCCCTGATGCTATTGGACAGTTACGTTGTTTGGTAGGTTTAAACATAGGGGGAAACAATATTGTTACACTACCTCAATGCATCAAGGAACTTCCTAAGCTAAGGTGGTTGAATTTGCAGTATTGTAAGCATCTAAAGTGGTTGCCAAGTACCCTTTTGCCGATAGGAAGGGGTTGGTACTCTGGAGGAATATATGTTTTCAACTGCCCCAATTTGAGTGACAAGGAAAGTTGTCTTGTCACAGTTATTTCATGGATGATAAAAATGATTCAGGTAAACCTGCAATGCTCCTTCCCCAGTTTCAGAATTGAAGCTGTTATTCCAGGAAGTAAAATTCCAAGGTGGTTCAACAATCAGAATACGGGGAGTTTAATGAAGCTGGATCCATCTCCCATTGTGGATGACAATAATTGGATTGGCATTGCTTGTTGTGTAACATTTGTTGTACATCAAGCTCCAACTCAGTTGCTTGAAGAAACGATTCTTTCTGATCTAATTCATTTTGGTTTTCGTTCTCGGTTTAGGGGCAGTTATTTCTCAGTTCCAATAGATCTTAAAAAAGATTCTATCACAAATGAATTAGATCATATGTGGCTAATATTTTTCTCTCGGGAAGATTTCATCGATGGTCATGTAAGTTTTTTGAAAGGAGGAGCATCTGATCTTGATGGTATTGAATTGGCCACAACGACTCATCATCCAGAAGTAGAAGTGAAGAGTTGTGGTTACCATTGGCTATTTAAGGAAGATTTGGAACAATTTAACCCAACAATGATGTACACTTCCAATACTTCATCTCAGAATCAGAAGCACAAGGTTTTGGCAATTCAAGATCACCAAATGGCCTGCGATCCTTATATTCATCAATGA 1905 0.3722 MEKEIFLDIACFFSGNDETYVKGMLHIRGFHPEIGIRTLIDKSLITWDQSSIVMHDLLRELGRNIVREKSPKEPRKWSRLWDQKDLSDVLRENKAAKNLEAIVLRRYLEIKEELYVEALSKMSRLKLLILGKLNFSGSLLFLSNDLGYLYWEGYPFTYLPSNFQPNKLVKLILHHSNIKELWEGIKDLPNLTHMELCHSKNLVKIPNLSLAPNLKSLDLKGCGKLVHLDASIGALEKLDFLNLENCKNLVSIPNSIFHLNSLRYLNLSGCWKLLKYQLLEKPRQKEQFNTVQSVQRRMTVCKTLRMPLHFLSSRRRADSVGFLLTSLSHFPALIYLDISFCNLVQIPDAIGQLRCLVGLNIGGNNIVTLPQCIKELPKLRWLNLQYCKHLKWLPSTLLPIGRGWYSGGIYVFNCPNLSDKESCLVTVISWMIKMIQVNLQCSFPSFRIEAVIPGSKIPRWFNNQNTGSLMKLDPSPIVDDNNWIGIACCVTFVVHQAPTQLLEETILSDLIHFGFRSRFRGSYFSVPIDLKKDSITNELDHMWLIFFSREDFIDGHVSFLKGGASDLDGIELATTTHHPEVEVKSCGYHWLFKEDLEQFNPTMMYTSNTSSQNQKHKVLAIQDHQMACDPYIHQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120891g00016 634 Gene3D Ribonuclease Inhibitor 318 419 IPR032675 -
Stsc120891g00016 634 Pfam Leucine Rich Repeat 167 186 IPR011713 -
Stsc120891g00016 634 Gene3D Ribonuclease Inhibitor 82 299 IPR032675 -
Stsc120891g00016 634 Pfam Leucine rich repeat 333 387 IPR001611 GO:0005515
Stsc120891g00016 634 SUPERFAMILY "Winged helix" DNA-binding domain 2 90 IPR036390 -
Stsc120891g00016 634 Pfam C-JID domain 452 597 IPR045344 -
Stsc120891g00016 634 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 276 IPR044974 GO:0006952
Stsc120891g00016 634 SUPERFAMILY L domain-like 54 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120891g00016 Stsc-Chr120891 132690 135229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120891g00016 2 382 WRKY Transcription Factor Family AT4G12020 36.409 7.44e-48 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120891g00016 - - ahf:112732546 776.933