Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120891g00015 | ATGGAAATGGAGGAATACCCTAATAACAATAATGAAAATGATGATAATAATAATAATAATTTGAGGCAAGAAAACACAGGTGCAAGTCCAAGGCCAAGTTTCTTGTACTCATCAACTACTACTAATAATAGTGCTTCTATTCTTCATCATCATCATCACCAAGTTCCAATCAACACCTTTAATAATCTTCAATCTTCAGATCATCATCATCACAATCATCAACAATGTTTTGAATCTGATAATCAAGTTCTTGTTGTGAAGACTGAAGAAACAAGCACTACCCCTAATCATTATAATCATCATCTTCAAACTCCAATTCTTCATCACTATCCTTTGTTGAGAGGGAATAATAATAATAATAATAATAATAATAATAATACTATGCAACATCCCCACCATAGCCAGCAACACCATCACCAACAAGGAGGGAATTTCAACCAAAGCTCTAATAATGGTGAAGTTGAAGCCATCAAAGCCAAAATCATTGCTCATCCACAATACTCTAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTTGGAGCTCCGCCAGAAGTGGCGGCGCGACTGGTGGCGGCGAGGCAAGAATTTGAGGCACGGCAACAACGATCTTCATCAGTTATTAGCTCAAGGGAAAGTTCCAATAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTGGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGGATAGAAACACAGCTAAATATGCTTTGCAATAATGGACCCCTTAGGATCTTCCAAGATGAGAAATGTGAAGGGATTGGTTCATCAGAAGAGGAACAAGAGAACAGTGGAGGAGAAACAGAAGTAGCAGAGATTGATCCAAGAGCAGAAGATCGTGAACTGAAGAACCATTTGCTTAGAAAATATAGCGGTTATTTGAGTAGCCTTAAGCAAGAACTCTCAAAGAAGAAGAAGAAAGGAAAACTTCCTAAGGAAGCTAGACAGAAGCTACTTAACTGGTGGGAACTTCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCACTGGCAGAATCAACAGGTTTGGATCAAAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAGTTCATGGTGATGGATGGCCTTCATCATGCTCATCATCAGAAACCAACAACCCTCTATATGGATCCTCATTTCTTGCCTGATGCTCACTACCGTCTCGCCCCATGA | 1278 | 0.3951 | MEMEEYPNNNNENDDNNNNNLRQENTGASPRPSFLYSSTTTNNSASILHHHHHQVPINTFNNLQSSDHHHHNHQQCFESDNQVLVVKTEETSTTPNHYNHHLQTPILHHYPLLRGNNNNNNNNNNNTMQHPHHSQQHHHQQGGNFNQSSNNGEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVAARLVAARQEFEARQQRSSSVISSRESSNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNNGPLRIFQDEKCEGIGSSEEEQENSGGETEVAEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHHAHHQKPTTLYMDPHFLPDAHYRLAP | 425 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120891g00015 | 425 | ProSiteProfiles | ELK domain profile. | 303 | 323 | IPR005539 | GO:0003677 | |
Stsc120891g00015 | 425 | Pfam | ELK domain | 303 | 324 | IPR005539 | GO:0003677 | |
Stsc120891g00015 | 425 | CDD | homeodomain | 335 | 387 | IPR001356 | GO:0003677 | |
Stsc120891g00015 | 425 | SMART | HOX_1 | 325 | 390 | IPR001356 | GO:0003677 | |
Stsc120891g00015 | 425 | Pfam | Homeobox KN domain | 343 | 382 | IPR008422 | GO:0003677|GO:0006355 | |
Stsc120891g00015 | 425 | MobiDBLite | consensus disorder prediction | 10 | 39 | - | - | |
Stsc120891g00015 | 425 | MobiDBLite | consensus disorder prediction | 115 | 150 | - | - | |
Stsc120891g00015 | 425 | ProSitePatterns | 'Homeobox' domain signature. | 361 | 384 | IPR017970 | GO:0000981|GO:0006355 | |
Stsc120891g00015 | 425 | SUPERFAMILY | Homeodomain-like | 324 | 399 | IPR009057 | - | |
Stsc120891g00015 | 425 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Stsc120891g00015 | 425 | SMART | KNOX2_2 | 210 | 261 | IPR005541 | GO:0003677|GO:0005634 | |
Stsc120891g00015 | 425 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 127 | 393 | - | - | |
Stsc120891g00015 | 425 | FunFam | Homeobox protein knotted-1-like 2 | 328 | 390 | - | - | |
Stsc120891g00015 | 425 | ProSiteProfiles | 'Homeobox' domain profile. | 323 | 386 | IPR001356 | GO:0003677 | |
Stsc120891g00015 | 425 | SMART | ELK_2 | 303 | 324 | IPR005539 | GO:0003677 | |
Stsc120891g00015 | 425 | MobiDBLite | consensus disorder prediction | 276 | 300 | - | - | |
Stsc120891g00015 | 425 | Pfam | KNOX2 domain | 215 | 260 | IPR005541 | GO:0003677|GO:0005634 | |
Stsc120891g00015 | 425 | Gene3D | - | 320 | 393 | - | - | |
Stsc120891g00015 | 425 | SMART | KNOX1_2 | 155 | 199 | IPR005540 | GO:0003677|GO:0005634 | |
Stsc120891g00015 | 425 | MobiDBLite | consensus disorder prediction | 115 | 131 | - | - | |
Stsc120891g00015 | 425 | Pfam | KNOX1 domain | 156 | 198 | IPR005540 | GO:0003677|GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120891g00015 | Stsc-Chr120891 | 107360 | 114558 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120891g00015 | 113 | 425 | Homeobox Transcription Factor Family | AT4G08150 | 69.325 | 1.22e-146 | 421 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-KNOX | Stsc120891g00015 | KNOX2 | 3.9e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120891g00015 | - | - | gmx:100807602 | 488.419 |