Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120891g00015 ATGGAAATGGAGGAATACCCTAATAACAATAATGAAAATGATGATAATAATAATAATAATTTGAGGCAAGAAAACACAGGTGCAAGTCCAAGGCCAAGTTTCTTGTACTCATCAACTACTACTAATAATAGTGCTTCTATTCTTCATCATCATCATCACCAAGTTCCAATCAACACCTTTAATAATCTTCAATCTTCAGATCATCATCATCACAATCATCAACAATGTTTTGAATCTGATAATCAAGTTCTTGTTGTGAAGACTGAAGAAACAAGCACTACCCCTAATCATTATAATCATCATCTTCAAACTCCAATTCTTCATCACTATCCTTTGTTGAGAGGGAATAATAATAATAATAATAATAATAATAATAATACTATGCAACATCCCCACCATAGCCAGCAACACCATCACCAACAAGGAGGGAATTTCAACCAAAGCTCTAATAATGGTGAAGTTGAAGCCATCAAAGCCAAAATCATTGCTCATCCACAATACTCTAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTTGGAGCTCCGCCAGAAGTGGCGGCGCGACTGGTGGCGGCGAGGCAAGAATTTGAGGCACGGCAACAACGATCTTCATCAGTTATTAGCTCAAGGGAAAGTTCCAATAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTGGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGGATAGAAACACAGCTAAATATGCTTTGCAATAATGGACCCCTTAGGATCTTCCAAGATGAGAAATGTGAAGGGATTGGTTCATCAGAAGAGGAACAAGAGAACAGTGGAGGAGAAACAGAAGTAGCAGAGATTGATCCAAGAGCAGAAGATCGTGAACTGAAGAACCATTTGCTTAGAAAATATAGCGGTTATTTGAGTAGCCTTAAGCAAGAACTCTCAAAGAAGAAGAAGAAAGGAAAACTTCCTAAGGAAGCTAGACAGAAGCTACTTAACTGGTGGGAACTTCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCACTGGCAGAATCAACAGGTTTGGATCAAAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAGTTCATGGTGATGGATGGCCTTCATCATGCTCATCATCAGAAACCAACAACCCTCTATATGGATCCTCATTTCTTGCCTGATGCTCACTACCGTCTCGCCCCATGA 1278 0.3951 MEMEEYPNNNNENDDNNNNNLRQENTGASPRPSFLYSSTTTNNSASILHHHHHQVPINTFNNLQSSDHHHHNHQQCFESDNQVLVVKTEETSTTPNHYNHHLQTPILHHYPLLRGNNNNNNNNNNNTMQHPHHSQQHHHQQGGNFNQSSNNGEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVAARLVAARQEFEARQQRSSSVISSRESSNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNNGPLRIFQDEKCEGIGSSEEEQENSGGETEVAEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHHAHHQKPTTLYMDPHFLPDAHYRLAP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120891g00015 425 ProSiteProfiles ELK domain profile. 303 323 IPR005539 GO:0003677
Stsc120891g00015 425 Pfam ELK domain 303 324 IPR005539 GO:0003677
Stsc120891g00015 425 CDD homeodomain 335 387 IPR001356 GO:0003677
Stsc120891g00015 425 SMART HOX_1 325 390 IPR001356 GO:0003677
Stsc120891g00015 425 Pfam Homeobox KN domain 343 382 IPR008422 GO:0003677|GO:0006355
Stsc120891g00015 425 MobiDBLite consensus disorder prediction 10 39 - -
Stsc120891g00015 425 MobiDBLite consensus disorder prediction 115 150 - -
Stsc120891g00015 425 ProSitePatterns 'Homeobox' domain signature. 361 384 IPR017970 GO:0000981|GO:0006355
Stsc120891g00015 425 SUPERFAMILY Homeodomain-like 324 399 IPR009057 -
Stsc120891g00015 425 MobiDBLite consensus disorder prediction 1 39 - -
Stsc120891g00015 425 SMART KNOX2_2 210 261 IPR005541 GO:0003677|GO:0005634
Stsc120891g00015 425 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 127 393 - -
Stsc120891g00015 425 FunFam Homeobox protein knotted-1-like 2 328 390 - -
Stsc120891g00015 425 ProSiteProfiles 'Homeobox' domain profile. 323 386 IPR001356 GO:0003677
Stsc120891g00015 425 SMART ELK_2 303 324 IPR005539 GO:0003677
Stsc120891g00015 425 MobiDBLite consensus disorder prediction 276 300 - -
Stsc120891g00015 425 Pfam KNOX2 domain 215 260 IPR005541 GO:0003677|GO:0005634
Stsc120891g00015 425 Gene3D - 320 393 - -
Stsc120891g00015 425 SMART KNOX1_2 155 199 IPR005540 GO:0003677|GO:0005634
Stsc120891g00015 425 MobiDBLite consensus disorder prediction 115 131 - -
Stsc120891g00015 425 Pfam KNOX1 domain 156 198 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120891g00015 Stsc-Chr120891 107360 114558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120891g00015 113 425 Homeobox Transcription Factor Family AT4G08150 69.325 1.22e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc120891g00015 KNOX2 3.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120891g00015 - - gmx:100807602 488.419