Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120890g00022 ATGGCTTGTCTCTCGCTTCAACTACTGTTTTTCAGTTTCATCACTCTCACAATTCATGCGACAAAGGCGACATGTGCAGCACCCTACCATCACCGTACCACCCTTAGAACCTCGTCTACTTCTTCTACCAACTCTTCCTCCAATAATCATCACCGGAGCCACACTTGGGTAGGACCAATAGGTCACCGGGTAATCACCGTCGACGTAAACGGCAGTGCACAGTTCGGGTCGGTGCAAGCTGCGGTGAATGCCGTACCAGACAACAACAGAATGAACGTGCTCATCCAAATCAGCCCCGGATACTACATAGAGAAGGTTGTAGTGCCCGTGACGAAGCCGTACATAACGTTTCAGGGAGCGGGAAAAGAAGTGACGGTAATAGAATGGCATGATAGGGCCAGTGACCCGGGCCCCAACGGACAGCAACTTCGTACTTACAGAACTGCTTCTGTCACTGTTTTTGCCAACTATTTCTCTGCTCGCAATATCAGCTTCAAGAACACGGCGCCGGCACCAATGCCGGGTATGCAAGGTTGGCAAGCGGCGGCGTTTCGAATATCCGGTGACAAAGCATACTTCTCAGGCTGTGGATTCTACGGAGCACAAGACACTCTTTGTGACGACGCTGGCAGGCATTACTTCAAGGACTGCTATATCCAGGGTTCCATTGATTTCATTTTTGGGAATGGCAGATCCATGTACAAGGATTGCCAGCTACACTCAATAGCAACGAGATTCGGTTCCATAGCAGCCCATGATAGGAGACATCCAGAAGAGAAGACGGGCTTTGCATTCGTGAGATGCAAGGTGACGGGCACAGGCCCGCTCTATGTGGGAAGAGCCATGGGCCAGTACTCCAGAATTGTCTACTCTTACACTTATTTCGATGACATTATCGCTCATGGCGGTTGGGATGATTGGGACCATGCCAACAATAAGAACAAGACTGTGTTCTTTGGAATGTACAAGTGTTGGGGACCAGGAGCAGAGGCAGTACGTGGGGTGTCATGGGCCAGAGAGTTAGATTTCGAATCTGCCCACCCATTTCTCGTCAAGAGCTTCGTCAATGGCAGACATTGGATTGCACCCTCTGATGCTTAG 1101 0.5023 MACLSLQLLFFSFITLTIHATKATCAAPYHHRTTLRTSSTSSTNSSSNNHHRSHTWVGPIGHRVITVDVNGSAQFGSVQAAVNAVPDNNRMNVLIQISPGYYIEKVVVPVTKPYITFQGAGKEVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKDCYIQGSIDFIFGNGRSMYKDCQLHSIATRFGSIAAHDRRHPEEKTGFAFVRCKVTGTGPLYVGRAMGQYSRIVYSYTYFDDIIAHGGWDDWDHANNKNKTVFFGMYKCWGPGAEAVRGVSWARELDFESAHPFLVKSFVNGRHWIAPSDA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120890g00022 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 61 362 - -
Stsc120890g00022 366 Pfam Pectinesterase 65 357 IPR000070 GO:0030599|GO:0042545
Stsc120890g00022 366 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Stsc120890g00022 366 Gene3D - 61 365 IPR012334 -
Stsc120890g00022 366 FunFam Pectinesterase 60 363 - -
Stsc120890g00022 366 MobiDBLite consensus disorder prediction 34 54 - -
Stsc120890g00022 366 SUPERFAMILY Pectin lyase-like 62 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120890g00022 Stsc-Chr120890 122048 124623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120890g00022 8 366 Carbohydrate Esterase AT5G47500 72.981 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120890g00022 - - cam:101501763 636.336