Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120890g00021 ATGGAGAGGCACAAATGCAAGCTCTGTTCCAGGACATTCGCCAATGGCAGAGCTCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTTCCTCTCCCTCCAAAGCCACAACCACAACCACGTTCTTTTCACTACTCGTCTTATTCAGAATCAGAGCATGATGATGATGATGATAATGAAGATGAAGAAAAAGGCTATGGATTAAGAGAGAACCCGAAGAGAAGCTTCAGGGTTGCAGATCCTGAATTCTCTTTCCCTGCTGCTGATGCTACTGCAGTGGTCCAAGACAGAGAGAGCGAGACTGAGTCAAAGACCAACCCGACTCGGACACGAAGACGATCCAACCGTACACGAAAATCCATTACCAACAAGAGGACCAAGCTCATGAGTTTTATGGACTCACCACCACCACAAGAGGCAGCAGCAGAGCCTGTTAGCTCCGTTTCCGATACTTCGCCGGAAGAAGACCTGGCCATGTGCCTCATGATGCTGTCAAGGGACAAATGGAGGAAGACAAGTGTTGAAGAAGAAGAAGAAGGAGAAGAAGAGATGAAGTTATTGAGGAATAATAATAATAAGAAGAAGAAGCTTCGAGGGAAGCATCATCATCATCTTCAGTGCGACAAGTGTGGGAAAACGTTTCGATCTTCAGGGGCATTGGGGAGCCACAGAAGCATATGCCTCTGTGATGAAGCTGATGGCACTGACAGAATCTTCCAATGCCCGTATTGTTCAAAGGTTTTCGGGTCGGGTCAAGCACTCGGTGGTCATAAGAGATCTCACCTTCTTCCATCTTCTTCTTCTTCTGTTATCAATGCTAACCATAATAATAATAATCTTAGATTGAAACAACAAAGCTTCATAGATCTCAACATGCCTGCTCCACCTGAAGAAGACGACCTTAGTGTTCTCTCTGATGCATAA 924 0.461 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQPQPRSFHYSSYSESEHDDDDDNEDEEKGYGLRENPKRSFRVADPEFSFPAADATAVVQDRESETESKTNPTRTRRRSNRTRKSITNKRTKLMSFMDSPPPQEAAAEPVSSVSDTSPEEDLAMCLMMLSRDKWRKTSVEEEEEGEEEMKLLRNNNNKKKKLRGKHHHHLQCDKCGKTFRSSGALGSHRSICLCDEADGTDRIFQCPYCSKVFGSGQALGGHKRSHLLPSSSSSVINANHNNNNLRLKQQSFIDLNMPAPPEEDDLSVLSDA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120890g00021 307 Gene3D Classic Zinc Finger 170 268 - -
Stsc120890g00021 307 SMART c2h2final6 205 225 IPR013087 -
Stsc120890g00021 307 SMART c2h2final6 239 261 IPR013087 -
Stsc120890g00021 307 SMART c2h2final6 4 26 IPR013087 -
Stsc120890g00021 307 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Stsc120890g00021 307 MobiDBLite consensus disorder prediction 28 152 - -
Stsc120890g00021 307 Pfam Zinc finger, C2H2 type 206 225 IPR013087 -
Stsc120890g00021 307 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 306 IPR044303 GO:0006355
Stsc120890g00021 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 226 IPR013087 -
Stsc120890g00021 307 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Stsc120890g00021 307 MobiDBLite consensus disorder prediction 95 109 - -
Stsc120890g00021 307 Pfam C2H2-type zinc finger 3 28 - -
Stsc120890g00021 307 Pfam C2H2-type zinc finger 239 261 - -
Stsc120890g00021 307 SUPERFAMILY beta-beta-alpha zinc fingers 236 262 IPR036236 -
Stsc120890g00021 307 Coils Coil 177 197 - -
Stsc120890g00021 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 261 IPR013087 -
Stsc120890g00021 307 SUPERFAMILY beta-beta-alpha zinc fingers 3 224 IPR036236 -
Stsc120890g00021 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120890g00021 Stsc-Chr120890 116453 117728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120890g00021 1 304 C2H2 Transcription Factor Family AT3G60580 35.494 5.51e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120890g00021 zf-C2H2_6 1.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120890g00021 - - aip:107643045 437.573