Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120890g00003 ATGACGCCATTGCCGGTGGAGCAGACGGGGGAATCAGCGGCGACGGAGTCTCAGAGATCTATCCCGACGCCGTTTCTGACGAAGACGTACCAGCTGGTGGATGATCCCTCTGCTGATGACCTAATCTCATGGAACGAAGATGGCACCACCTTTATTGTTTGGCGACCAGCTGAATTCGCTCGAGATTTGCTCCCAAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGATTTCGCAAGGTCGTACCTGACCGTTGGGAATTCGCTAATGAATGTTTCCGGCGAGGGGAGAAAGGTTTGCTTCGCGACATACAGAGGCGGAAAATCTCGCCGGCGGCACCAGCTGCCGTCGCAGACAGTAACGCCGTGACGGTTGCCATGGCGGCACCGGTGAGAGTGGTGTCACCTACGCCGACGAATTCCGGCGATGAACAGGTACTGTCCTCGAACTCATCTCCGATTGCTCCTCCTCCTCCTGCTGCTGCTGCGCAACACAACGGTAGTAATAAAAATACGGTGCACCTTACAACGAGTTGCACCAGTGGACCTGAGCTAATAGAAGAGAACGAAAGGCTTAGGAAAGAGAACACTCAAATGAAAAACGAGTTGAGTCAATTGAGAGGTCTGTGTAATAAAATACTGGCGTTGATGACCAATTATGCTTCTCGTTCTTCAGCGCAATTACTAGACTCCTCTGCTAGTGGTGTCGCCGCCGCGGTAGCTGAAGGGAAAGCGTTGGAGCTTTTGCCTGACAAGCGAGTTCTATGTGCTGCTGACGCCGCCGGAGCGGAGGTTCCCAAGCTGTTTGGGGTTTCCATTGGGATGAAACGTTCTAGAACTGAAAGCGAGACTGAAACGGAGAGAGAAAGAGAAGATCACAATCAAACGCAAACGCAAACGCAGACACAGTCATCACAAGAACCTGACCGCGGGTCGGATGTAAAATCTGAGCCGTTGGATGCGGACGGATCGGATGATCAGGACCCTCGATGGCTTGAGCTCGGGTAA 1029 0.5238 MTPLPVEQTGESAATESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANECFRRGEKGLLRDIQRRKISPAAPAAVADSNAVTVAMAAPVRVVSPTPTNSGDEQVLSSNSSPIAPPPPAAAAQHNGSNKNTVHLTTSCTSGPELIEENERLRKENTQMKNELSQLRGLCNKILALMTNYASRSSAQLLDSSASGVAAAVAEGKALELLPDKRVLCAADAAGAEVPKLFGVSIGMKRSRTESETETEREREDHNQTQTQTQTQSSQEPDRGSDVKSEPLDADGSDDQDPRWLELG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120890g00003 342 Coils Coil 189 216 - -
Stsc120890g00003 342 MobiDBLite consensus disorder prediction 317 342 - -
Stsc120890g00003 342 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120890g00003 342 CDD bZIP 191 214 - -
Stsc120890g00003 342 MobiDBLite consensus disorder prediction 283 342 - -
Stsc120890g00003 342 Gene3D - 17 115 IPR036388 -
Stsc120890g00003 342 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120890g00003 342 MobiDBLite consensus disorder prediction 141 158 - -
Stsc120890g00003 342 MobiDBLite consensus disorder prediction 285 302 - -
Stsc120890g00003 342 MobiDBLite consensus disorder prediction 141 180 - -
Stsc120890g00003 342 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120890g00003 342 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120890g00003 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 314 IPR027725 -
Stsc120890g00003 342 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120890g00003 342 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120890g00003 342 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120890g00003 342 FunFam Heat stress transcription factor B-4 17 115 - -
Stsc120890g00003 342 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120890g00003 Stsc-Chr120890 11925 13409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120890g00003 16 342 HSF AT4G11660 53.602 4.46e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc120890g00003 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120890g00003 K09419 - gmx:100791020 436.032