Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120890g00002 ATGGAGGAGCTGGAGGAGTTCAGTTTTGAAATTGATTCAGCTGAAGGAGATGGAGTTCACTTATGCCTTTCTTCTCCCAAATGCAACTGCGATAGCACTCTTCTGAAATCGACTCCTGTTTCAGGGAGTAGCAAGGCTGAAGCTAGACGCTGGACAGAGGAAGAGGACAACCTTTTGATTCAGATAGTCAAGAAGCAGGAAGCAAGGAACTGGAAAAAAATAGCTGCGCACCTTCCAGGGCGAACTGAAGCCCAATGCATAAATCGCTGGCAGAAAGTTTTAGATCCTAATCTTGTAAAGGGTTATTGGACGAAGGAGGAGGATGATCGCCTCAATGTGCTAGTAAGAAAGTATGGTTCGAAGAAGTGGGCCGGAATTGCAAAATTCTTACCTGGTCGTATTGGGAAGCAATGCCGAGAGAGGTGGCACAATAATCTTGATCCAGCTATAAGGAAAGACGCATGGACGGAGGAGGAGGAATTGGCACTTACTCACTATCACCAAATTTATGGCAGTAAGTGGGCAAAGATCTCAATGTATCTTCCTGGAAGGACTGACAACGCTATTAAAAATCATTGGAATCGGTCAATGAAAAAGAAAGGGGATGCATCTTCACATCTTGGTTTTGACTTAAACGTTGCTCCTTCCAGTTTTTGCACTTCTCCAACAGAGCCAGCTCATATTTCAGTTGAAGTAGAGAACCATAGTCAGCTGTTGAAGGACAGGATTGGTAACTTCCCAACAACACACTTGGTTCTTCAAAAGCCCTGTTGCAAAACTCCCAAACGGCAGAAAGTGTCTTCCTCAGATGCCAAGAGAGGCCAAGCTGGAAATGGAAGCAACAAGAAAATCAACAGTATGTGGCACAATGCAGATGGCATGAGTAACGACATAGGATGTGGGAACAATAATGACAGCAGTGATACTCCCACAATGTCTGAACGAAGTCCAGAATCTGTACTAAGAAGCTTAGCCATGTCCTATGAGAATATTCCTTCAATTATTAGGAAACGAACTCCCACCAAGGCTGGCTGTGCCCAAACTCTGAAGCTGAACGTGTTATAA 1065 0.4432 MEELEEFSFEIDSAEGDGVHLCLSSPKCNCDSTLLKSTPVSGSSKAEARRWTEEEDNLLIQIVKKQEARNWKKIAAHLPGRTEAQCINRWQKVLDPNLVKGYWTKEEDDRLNVLVRKYGSKKWAGIAKFLPGRIGKQCRERWHNNLDPAIRKDAWTEEEELALTHYHQIYGSKWAKISMYLPGRTDNAIKNHWNRSMKKKGDASSHLGFDLNVAPSSFCTSPTEPAHISVEVENHSQLLKDRIGNFPTTHLVLQKPCCKTPKRQKVSSSDAKRGQAGNGSNKKINSMWHNADGMSNDIGCGNNNDSSDTPTMSERSPESVLRSLAMSYENIPSIIRKRTPTKAGCAQTLKLNVL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120890g00002 354 Gene3D - 100 151 - -
Stsc120890g00002 354 MobiDBLite consensus disorder prediction 259 320 - -
Stsc120890g00002 354 CDD SANT 50 94 IPR001005 -
Stsc120890g00002 354 FunFam Transcriptional activator Myb isoform A 100 152 - -
Stsc120890g00002 354 Pfam Myb-like DNA-binding domain 50 94 IPR001005 -
Stsc120890g00002 354 Pfam Myb-like DNA-binding domain 100 146 IPR001005 -
Stsc120890g00002 354 Pfam Myb-like DNA-binding domain 152 194 IPR001005 -
Stsc120890g00002 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 201 IPR017930 -
Stsc120890g00002 354 Gene3D - 153 208 - -
Stsc120890g00002 354 Gene3D - 49 99 - -
Stsc120890g00002 354 CDD SANT 103 146 IPR001005 -
Stsc120890g00002 354 PANTHER MYB PROTEIN-RELATED 50 133 - -
Stsc120890g00002 354 SUPERFAMILY Homeodomain-like 97 193 IPR009057 -
Stsc120890g00002 354 SMART sant 47 96 IPR001005 -
Stsc120890g00002 354 SMART sant 99 148 IPR001005 -
Stsc120890g00002 354 SMART sant 151 199 IPR001005 -
Stsc120890g00002 354 SUPERFAMILY Homeodomain-like 49 98 IPR009057 -
Stsc120890g00002 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 150 IPR017930 -
Stsc120890g00002 354 ProSiteProfiles SANT domain profile. 46 88 IPR017884 -
Stsc120890g00002 354 ProSiteProfiles Myb-like domain profile. 95 146 IPR001005 -
Stsc120890g00002 354 ProSiteProfiles Myb-like domain profile. 147 197 IPR001005 -
Stsc120890g00002 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 94 IPR017930 -
Stsc120890g00002 354 MobiDBLite consensus disorder prediction 270 320 - -
Stsc120890g00002 354 FunFam Transcriptional activator Myb isoform A 47 99 - -
Stsc120890g00002 354 CDD SANT 154 195 IPR001005 -
Stsc120890g00002 354 ProSiteProfiles Myb-like domain profile. 43 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120890g00002 Stsc-Chr120890 7884 10111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120890g00002 51 200 MYB Transcription Factor Family AT5G02320 66.667 8.70e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120890g00002 Myb_DNA-binding 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120890g00002 - K09420 adu:107488127 567.77