Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120889g00019 ATGGACACTGCGAATCAGCAGACGCTGAAAGGAAGAACCTTTGATGATGATGACGACGACGAAGCCCAACAGCAACAACAACAAACTGTGCTTGTTCCCATGCAGGTGAATGGTGTGTTGAACCCTTTTGATGGAGGTTCTCACGAGGTGGTAGAAAAAGCTTTCGTGAGTTCTGGGTTGTCTTCTTCTACTGCTGCTACTGCCGTTCAGCCAAGAACCAGTGAGCTCACCATTGCATTTGAAGGCGAGGTTTATGTTTTCCCAGCGGTTACCCCAGAAAAGGTGCAGGCTGTATTGTTACTCTTGGGAGCCCAAGAGATCCCCAGGACTGCTGCCATCTCCGATTCTTCATTGCAGCAGAACTGTCAGCAGATTATGGGAATAAATGATGCTTCCCGAGGTTCAAAGGATTCGCGGAGAATTGAATCACTTGTAAGGTTCCGTGAAAAGCGAAAAGACCGATGTTTTGAGAAAAAAATCCGGTACACTTGCCGTAAAGAGGTAGCCGAGAGGATGCATCGTAAGAATGGACAGTTTGCATCAGTGAAGGAAGGGTACAAATCTCCTGTTGAAAATTTCGATTCAAGCAACGGTGGAGGTGATCCTTATTCAGAATCTATTGAACGTAGATGTCAGCACTGTGGAATTAGTGAGAAGTCAACTCCAGCTATGCGTCGAGGACCATCTGGTCCAAGATCTCTGTGCAACGCTTGTGGTCTTATGTGGGCTAATAAGGGAACTCTAAGAGATCTCAGCAAAGCAGCAAAGGTCACTTTTGAACAAAATGGACAGGATACATCAGCTGATATAAAACCTTCGCCAACAGAACCAGAGAACTCTTTCCCCGACCAGAACGAAGATATCTGTCCTGAGGAAGCTAAACCTATGCCAATAGATTCCAGACAGTCATCCGAGAGGAACAATGATCAGTGTACACTTGATACTGCTGAAGCAGTTACCAACGATATATCCATCCAGATGGAGAATAATGCTCTCAGTATACATCAAGAGGATAATAATCTTGAAGATTTTGCTGATGCTTCGGGAACAGAATTTGATATTCCTGCCTGTTTTGATGAGCAGGTTGATATTGACATTGATGATTCCAACATGAGGACTTACTGGCTATGA 1131 0.4474 MDTANQQTLKGRTFDDDDDDEAQQQQQQTVLVPMQVNGVLNPFDGGSHEVVEKAFVSSGLSSSTAATAVQPRTSELTIAFEGEVYVFPAVTPEKVQAVLLLLGAQEIPRTAAISDSSLQQNCQQIMGINDASRGSKDSRRIESLVRFREKRKDRCFEKKIRYTCRKEVAERMHRKNGQFASVKEGYKSPVENFDSSNGGGDPYSESIERRCQHCGISEKSTPAMRRGPSGPRSLCNACGLMWANKGTLRDLSKAAKVTFEQNGQDTSADIKPSPTEPENSFPDQNEDICPEEAKPMPIDSRQSSERNNDQCTLDTAEAVTNDISIQMENNALSIHQEDNNLEDFADASGTEFDIPACFDEQVDIDIDDSNMRTYWL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120889g00019 376 ProSitePatterns GATA-type zinc finger domain. 211 238 IPR000679 GO:0006355|GO:0043565
Stsc120889g00019 376 PANTHER GATA TRANSCRIPTION FACTOR 28 15 353 IPR045280 GO:0006355
Stsc120889g00019 376 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Stsc120889g00019 376 ProSiteProfiles GATA-type zinc finger domain profile. 205 261 IPR000679 GO:0006355|GO:0043565
Stsc120889g00019 376 SMART GATA_3 205 258 IPR000679 GO:0006355|GO:0043565
Stsc120889g00019 376 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 259 - -
Stsc120889g00019 376 Pfam GATA zinc finger 211 247 IPR000679 GO:0006355|GO:0043565
Stsc120889g00019 376 SMART tify_2 69 104 IPR010399 -
Stsc120889g00019 376 Gene3D - 204 265 IPR013088 GO:0006355|GO:0008270
Stsc120889g00019 376 CDD ZnF_GATA 210 253 IPR000679 GO:0006355|GO:0043565
Stsc120889g00019 376 Pfam tify domain 71 103 IPR010399 -
Stsc120889g00019 376 ProSiteProfiles Tify domain profile. 69 104 IPR010399 -
Stsc120889g00019 376 Pfam CCT motif 140 182 IPR010402 GO:0005515
Stsc120889g00019 376 MobiDBLite consensus disorder prediction 1 28 - -
Stsc120889g00019 376 MobiDBLite consensus disorder prediction 260 309 - -
Stsc120889g00019 376 MobiDBLite consensus disorder prediction 260 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120889g00019 Stsc-Chr120889 134386 138380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120889g00019 75 258 Tify Gene Family AT1G51600 51.531 2.77e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc120889g00019 CCT 3.1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120889g00019 - - adu:107468732 657.521