Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120889g00012 ATGAGTTCCGAAGGTGGCAATGAAGATTGCCTAGGTTGGGCAGCAAGAGATGCATCTGGTGTTCTCTCACCATACAAATTCAGTCGCAGGGCTGTAGGAAATGATGATGTTTATGTTAAGATCACACACTGCGGTATTTGTTATGCTGATGTAGTTGCCACAAGGAATGCATTTGGTGGCACTAAATACCCTCTTGTACCCGGTGTTAAGCTAATCTATGGGAGTTTTGTTAGACATGAGATTGTAGGCTCTGTGACAAAGGTTGGTTCCAATGTCCAACGTTTCGATGTTGGCGACCATGTTGGAGTAGGGACTTATGTTAATTCATGCCGTGACTGCGGAAATTGCAATGCCGGACAGGAAATTCAATGTGGTAAAGGACGAGTTTTCACTTATGACAGTGTTGATTCTGATGGAACAATCACAAAAGGAGGATACTCCACTTTCATAGTAGTCCATCATAGGTATTGTTATATGATACCAAAAAGCTATCCATTGGCTTCGGCAGCACCTTTGCTGTGTGCCGGAATCACAGTTTATTCGCCGATGATTCGCCACAAGATGAATCAGCCCGGTAAATCTCTAGGAGTTATTGGCCTTGGTGGCCTTGGTCATATGGCAGTTAAATTTGGAAAGGCTTTTGGTTTGAATGTAACAGTTTTCAGCACCAGCATATCAAAGAAAGATGAGGCTCTCAATCTGTTTGGTGCAGATAACTTTGTTGTTTCATCTGATGAAGAACAAATGAGTGCATTGGCTGAGTCATTAGACTTTATAATTGACACAGCATCCGGTAATCATCCTTTTGATCCTTACATGTTTCTTCTAAAAACATGTGGTGTTTTAGTCTTAGTTGGAGCACCAAGTGAAATCAAATTAAGCCCTGGAAGCCTTATTGGTGGGATGAGGAGCATTTCTGGAAGTGCTGCAGGAGGTACAAAAGATACTCAAAAGATGATTGATTTTTGTGCTGAGCAAGAGATTTATCCAAATATAGAAGTGATTCCCATTGAATATGCTAATGAAGCTTTTGAAAGGATCATAAACAAAGATGTCAAGTATAGGTTTGTGATAGACATTGAAAATTCTCTGAAGTAA 1098 0.4062 MSSEGGNEDCLGWAARDASGVLSPYKFSRRAVGNDDVYVKITHCGICYADVVATRNAFGGTKYPLVPGVKLIYGSFVRHEIVGSVTKVGSNVQRFDVGDHVGVGTYVNSCRDCGNCNAGQEIQCGKGRVFTYDSVDSDGTITKGGYSTFIVVHHRYCYMIPKSYPLASAAPLLCAGITVYSPMIRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVFSTSISKKDEALNLFGADNFVVSSDEEQMSALAESLDFIIDTASGNHPFDPYMFLLKTCGVLVLVGAPSEIKLSPGSLIGGMRSISGSAAGGTKDTQKMIDFCAEQEIYPNIEVIPIEYANEAFERIINKDVKYRFVIDIENSLK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120889g00012 365 CDD CAD1 12 359 IPR047109 GO:0016616
Stsc120889g00012 365 Gene3D - 13 360 - -
Stsc120889g00012 365 Pfam Alcohol dehydrogenase GroES-like domain 35 159 IPR013154 -
Stsc120889g00012 365 SUPERFAMILY GroES-like 16 193 IPR011032 -
Stsc120889g00012 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 328 IPR036291 -
Stsc120889g00012 365 Gene3D - 175 330 - -
Stsc120889g00012 365 Pfam Zinc-binding dehydrogenase 202 324 IPR013149 -
Stsc120889g00012 365 FunFam Cinnamyl alcohol dehydrogenase 175 330 - -
Stsc120889g00012 365 FunFam Putative cinnamyl alcohol dehydrogenase 6 331 360 - -
Stsc120889g00012 365 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 195 222 IPR029752 -
Stsc120889g00012 365 PANTHER ALDEHYDE REDUCTASE 9 363 IPR047109 GO:0016616
Stsc120889g00012 365 SMART PKS_ER_names_mod 20 310 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120889g00012 Stsc-Chr120889 87978 90232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120889g00012 2 365 Monolignol Biosynthesis Gene Families AT1G72680 69.505 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120889g00012 K00083 - gmx:100807617 571.237