Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120889g00011 ATGAATTCAGAAGAATGCCTTGCTTGGGCTGCAAGAGATGTTTCGGGACATCTCTCACCATACAAATTCAATCGCAGAGCTGTAGGAGATGATGATGTTTATGTTAAGATCACACACTGTGGTGTTTGTTATGCTGATATCGTTTGGACAAGGAATAAACATGGTGACTCCATGTACCCTGTTGTGCCAGGACATGAGATTGCAGGCATTGTGACAAAGGTTGGTTCCAATGTCAAGCGTTTCAATGTTGGCGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCCGCCACTGCGAGTATTGCGACGATGGACTAGAACATCAGTGCAGTAAGGGAGTTTTTACTTTCAATGGGGTTGATTCTGATGGCACAATCACAAAGGGAGGATACTCCAATTTCATAGTTGTCCATGAAAGGTATTGTTTCAAGATACCAAAAGGCTATCCATTGGCTTCAGCGGCACCTTTGCTGTGTGCCGGAATCACAGTTTATTCGCCGATGATTCGCCACAAGATGAATCAGCAGCCCGGAAAATCTCTAGGAGTGATTGGCCTTGGTGGGCTTGGTCACATGGCTGTTAAATTTGGGAAGGCTTTTGGTTTGAATGTAACAGTTTTCAGCACCAGCATATCTAAAAAAGATGAGGCCCTCAATGTTCTTGGTGCAGATAACTTTGTGATTTCATCTGATCAAGAGCAAATGAAAGGATTAACAAAGACATTAGACTTTATAATTGATACTGCATCTGGTGATCATCCTTTTGATCCTTACTTGGCACTTCTGAAAACATTTGGTATCCTAGTGGCGGTTGGTGCTGGAAGTGAAATCAAATTTAGCCCTAGAAGCTTATTTTTCGGATTGAGGACTATTTCTGGAAGTATTGTAGGAGGTACAAAAGAGATACAAGAGATGATTGATTTATGTGCTGAAAAGGGGATTTATCCAAAGATAGAAGTGATTCCTATTGACTATGCTAATGAAGCTATTGAAAGGGTCATCAAAAGTGACGTCAAGTATCGGTTTGTGATTGATATTGAGAACTCCCTAAAGTAA 1056 0.4148 MNSEECLAWAARDVSGHLSPYKFNRRAVGDDDVYVKITHCGVCYADIVWTRNKHGDSMYPVVPGHEIAGIVTKVGSNVKRFNVGDHVGVGTYVNSCRHCEYCDDGLEHQCSKGVFTFNGVDSDGTITKGGYSNFIVVHERYCFKIPKGYPLASAAPLLCAGITVYSPMIRHKMNQQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVFSTSISKKDEALNVLGADNFVISSDQEQMKGLTKTLDFIIDTASGDHPFDPYLALLKTFGILVAVGAGSEIKFSPRSLFFGLRTISGSIVGGTKEIQEMIDLCAEKGIYPKIEVIPIDYANEAIERVIKSDVKYRFVIDIENSLK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120889g00011 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 150 314 IPR036291 -
Stsc120889g00011 351 Gene3D - 160 316 - -
Stsc120889g00011 351 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 181 208 IPR029752 -
Stsc120889g00011 351 Pfam Alcohol dehydrogenase GroES-like domain 31 145 IPR013154 -
Stsc120889g00011 351 CDD CAD1 8 345 IPR047109 GO:0016616
Stsc120889g00011 351 PANTHER ALDEHYDE REDUCTASE 5 349 IPR047109 GO:0016616
Stsc120889g00011 351 SUPERFAMILY GroES-like 6 193 IPR011032 -
Stsc120889g00011 351 Pfam Zinc-binding dehydrogenase 188 310 IPR013149 -
Stsc120889g00011 351 SMART PKS_ER_names_mod 16 344 IPR020843 GO:0016491
Stsc120889g00011 351 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 64 78 IPR002328 GO:0008270|GO:0016491
Stsc120889g00011 351 FunFam Cinnamyl alcohol dehydrogenase 160 316 - -
Stsc120889g00011 351 FunFam Putative cinnamyl alcohol dehydrogenase 6 317 346 - -
Stsc120889g00011 351 FunFam probable cinnamyl alcohol dehydrogenase 9 176 - -
Stsc120889g00011 351 Gene3D - 9 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120889g00011 Stsc-Chr120889 81355 83174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120889g00011 5 351 Monolignol Biosynthesis Gene Families AT1G72680 73.199 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120889g00011 K00083 - vvi:100244482 572.007