Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120889g00010 ATGGGGCGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACTAGCCGGCAAGTAACGTTTTCGAAGAGAAGGAACGGATTGCTGAAGAAAGCCAGAGAATTATCCATTCTCTGTGATGCTGAAGTTGGATTGATCGTGTTCTCAAGCACTAGCAAGCTTTATGAATATTCAAGCACCAGCATGAAAGCGATTATTGAACGCTACAACAAGCTTAAAGAGGAACATAATCATCTGATGAATCCAGCTTCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGGAAATTGATGGGAGAAGAGCTTTCTGGACTAGGTGTTCAAGAATTACAAAATCTTGAAAACCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTCAGAGATGAGATTAAAGAACTAAACCAAAAGGGAAATCTCATTCATCAAGAAAATGTGGAACTCTATAAAAAGATGGAATTCTTACAAAAAGAAAATGCAGAGCTAAAAAAGGTTTATGAAGCAAGGAGTACAAATGAAGAGAATGCGGCATCCAATCCACCATACACTATTAGAAATGGATATGATTTACTTGCACCTATCAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCAGCCAAAGCAATGAAATTGGGACTACGGCTGCAATAA 717 0.4003 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTSKLYEYSSTSMKAIIERYNKLKEEHNHLMNPASEVKFWQREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFRDEIKELNQKGNLIHQENVELYKKMEFLQKENAELKKVYEARSTNEENAASNPPYTIRNGYDLLAPISLQLSQPETQYTEPPAKAMKLGLRLQ 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120889g00010 238 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc120889g00010 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Stsc120889g00010 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc120889g00010 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc120889g00010 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc120889g00010 238 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc120889g00010 238 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Stsc120889g00010 238 Coils Coil 163 183 - -
Stsc120889g00010 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc120889g00010 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc120889g00010 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc120889g00010 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc120889g00010 238 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Stsc120889g00010 238 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc120889g00010 238 Coils Coil 86 106 - -
Stsc120889g00010 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120889g00010 Stsc-Chr120889 60912 72650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120889g00010 1 237 MADS-box Gene Family AT2G14210 61.765 2.43e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc120889g00010 K-box 3.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120889g00010 K09264 - gmx:100808145 399.438