Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120888g00015 ATGTATTGGGGAGGGAACAACATGGGATTGGGATGGGGTGTTATGGTTGAAGATGAAGTTGGAGGTGGTTGGAGGAAGGGTCCTTGGACTTCTGAGGAAGATCGTTTGCTTATTGAATATGTCAAGATTCATGGTGAAGGTAGATGGAACTCTGTTGCTAGGCTTGCAGGACTAAAAAGAAATGGAAAGAGTTGCAGACTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGAGGTCAGATAACACCTCAAGAAGAGAGCATCATTCTTGAACTCCATGCTAGATGGGGAAACAGGTGGTCAACTATTGCGAGAAGCTTGCCGGGAAGAACAGACAATGAGATCAAGAACTACTGGAGGACTCATTTCAAGAAAAAGGTTAAGAATCCCTCCGACGCGGCTGAGAAGGCCAAAAACCGCCTCTTGAGGCGGCAGCAATTTCAGCAGCAACAACAATTGAAGTTCCAACAACAACAACAACAACAAATTCAACACCAACAAGAACAAGTTCAATTCAACTTGGACATGAAGGGAATCATGATGAACTTGCTTGAGATAGAAAATCATAATAATGACCATAGAGCCCCTTCAATGTCTCATGATATTGCCACCACGACCACCACCACTGCCACCACCAACAGCATGTACCAACAACAAAGCTCAACGGAAGAAGAGCATGGATTCTTCTACTACCCCATGATAATGAATAACAATAATGGCAATAACAATGATAGTAACAACNNNNNNNNNNAAATCTTGTGGGATGGACTTTGGAACTTGGATGATGTTTTTTGCAATTTCACTGCAGCCAGTGCTACAAGCAAACCAACTACTTTAGTTGCTCCATTTTGCTAA 858 0.4242 MYWGGNNMGLGWGVMVEDEVGGGWRKGPWTSEEDRLLIEYVKIHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKVKNPSDAAEKAKNRLLRRQQFQQQQQLKFQQQQQQQIQHQQEQVQFNLDMKGIMMNLLEIENHNNDHRAPSMSHDIATTTTTTATTNSMYQQQSSTEEEHGFFYYPMIMNNNNGNNNDSNNXXXXILWDGLWNLDDVFCNFTAASATSKPTTLVAPFC 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120888g00015 285 FunFam Myb transcription factor 26 78 - -
Stsc120888g00015 285 CDD SANT 28 73 IPR001005 -
Stsc120888g00015 285 CDD SANT 83 124 IPR001005 -
Stsc120888g00015 285 Gene3D - 83 128 - -
Stsc120888g00015 285 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Stsc120888g00015 285 SMART sant 25 75 IPR001005 -
Stsc120888g00015 285 SMART sant 78 126 IPR001005 -
Stsc120888g00015 285 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 259 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc120888g00015 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Stsc120888g00015 285 Gene3D - 26 78 - -
Stsc120888g00015 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 73 IPR017930 -
Stsc120888g00015 285 FunFam MYB transcription factor 83 163 - -
Stsc120888g00015 285 ProSiteProfiles Myb-like domain profile. 25 73 IPR001005 -
Stsc120888g00015 285 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Stsc120888g00015 285 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Stsc120888g00015 285 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120888g00015 Stsc-Chr120888 105506 107071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120888g00015 24 285 MYB Transcription Factor Family AT4G13480 53.309 4.26e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120888g00015 Myb_DNA-binding 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120888g00015 K09422 - gmx:100813935 326.25