Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120888g00011 ATGGAGCAGGAAGAACACGAAGTGTACGGTGCCGACATCCCCGACGAAGCTGACATGGACGCCGACGCCGACCTTCAGGAACACGACGACGACCATGACAACAACCACCATGCCTCCTCTCACGCTAACAAGCAAGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAGGCCAACGCCCTCCGCGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCTCTGTTCAAGATACGACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAGGTTCAACAACATTTTCAGTCATGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGATTTGCTTATGTGGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTATCTGCTAAGCGAACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGAAGACCTGGTTTCCGGTCTAGGAGGCCTTTCATGCCTGCTCCATTTTATCCATCATATGGTTATGGAAGGATTCCAAGGTTTAGAAGACCTACGCGTTACAGGCCATACTAG 663 0.4691 MEQEEHEVYGADIPDEADMDADADLQEHDDDHDNNHHASSHANKQDLEDMKKRLKEIEEEANALREMQAKVEKEMGSVQDTTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGFRSRRPFMPAPFYPSYGYGRIPRFRRPTRYRPY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120888g00011 220 Gene3D - 13 179 IPR012677 -
Stsc120888g00011 220 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 193 - -
Stsc120888g00011 220 SMART rrm1_1 98 169 IPR000504 GO:0003723
Stsc120888g00011 220 CDD RRM_II_PABPs 98 169 - -
Stsc120888g00011 220 MobiDBLite consensus disorder prediction 28 73 - -
Stsc120888g00011 220 FunFam Polyadenylate-binding protein 1 91 177 - -
Stsc120888g00011 220 Coils Coil 40 74 - -
Stsc120888g00011 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Stsc120888g00011 220 MobiDBLite consensus disorder prediction 75 89 - -
Stsc120888g00011 220 SUPERFAMILY RNA-binding domain, RBD 87 192 IPR035979 GO:0003676
Stsc120888g00011 220 MobiDBLite consensus disorder prediction 1 94 - -
Stsc120888g00011 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120888g00011 Stsc-Chr120888 84330 88106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120888g00011 98 169 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 6.16e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120888g00011 K14396 - gmx:100527545 322.398