Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120888g00007 | ATGGCGGATGCACCGACGAGTCCGGCGGCCGGGAGCCATGAGAGCGGTGAGGAGCAGAGCCCGCAGGGGTCTTCTTCCGGCGGCCTAGGGGCAAGAGAGCAGGACAGGTTCCTTCCTATCGCCAACATCAGCAGGATCATGAAGAAGGGGCTACCAGCCAATGGCAAGATCGCCAAGGACGCTAAGGACACAATGCAGGAGTGCGTTTCGGAATTCATCAGCTTCATCACCAGCGAGGCATGTGAGAAGTGCCAGAAAGAGAAGAGGAAGACCATCAATGGAGATGATTTGCTATGGGCGATGGCCACTTTAGGATTTGAAGACTACATAGAACCTCTTAAAGTGTACCTTGCAAGATTCAGAGAGTTGGAGGGTGACACCAAAGGATCTGCTAGAACTGGTGATGGATCTTTTAGACGAGATCAAGTTGGTCTAGCTGGTCAAAATACTCAGCTTGTTCATCAGGGTTCACTGAATTATATTAGTTCCCAGGTGCAGCAACAACACATGGTTATTCCTTCAATGCAAAGCCATGAATAA | 540 | 0.5019 | MADAPTSPAAGSHESGEEQSPQGSSSGGLGAREQDRFLPIANISRIMKKGLPANGKIAKDAKDTMQECVSEFISFITSEACEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARFRELEGDTKGSARTGDGSFRRDQVGLAGQNTQLVHQGSLNYISSQVQQQHMVIPSMQSHE | 179 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120888g00007 | 179 | PRINTS | CCAAT-binding transcription factor subunit A signature | 65 | 83 | - | - | |
Stsc120888g00007 | 179 | PRINTS | CCAAT-binding transcription factor subunit A signature | 84 | 102 | - | - | |
Stsc120888g00007 | 179 | PRINTS | CCAAT-binding transcription factor subunit A signature | 103 | 121 | - | - | |
Stsc120888g00007 | 179 | MobiDBLite | consensus disorder prediction | 12 | 29 | - | - | |
Stsc120888g00007 | 179 | Gene3D | Histone, subunit A | 29 | 168 | IPR009072 | GO:0046982 | |
Stsc120888g00007 | 179 | SUPERFAMILY | Histone-fold | 34 | 157 | IPR009072 | GO:0046982 | |
Stsc120888g00007 | 179 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Stsc120888g00007 | 179 | FunFam | Nuclear transcription factor Y subunit B-3 | 27 | 150 | - | - | |
Stsc120888g00007 | 179 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 68 | 84 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Stsc120888g00007 | 179 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 15 | 158 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Stsc120888g00007 | 179 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 37 | 101 | IPR003958 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120888g00007 | Stsc-Chr120888 | 54890 | 57711 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120888g00007 | 11 | 173 | CCAAT-HAP3 Transcription Factor Family | AT2G37060 | 71.341 | 2.41e-79 | 232 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YB | Stsc120888g00007 | CBFD_NFYB_HMF | 1.5e-28 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120888g00007 | K08065 | - | gmx:100779577 | 280.411 |