Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120888g00007 ATGGCGGATGCACCGACGAGTCCGGCGGCCGGGAGCCATGAGAGCGGTGAGGAGCAGAGCCCGCAGGGGTCTTCTTCCGGCGGCCTAGGGGCAAGAGAGCAGGACAGGTTCCTTCCTATCGCCAACATCAGCAGGATCATGAAGAAGGGGCTACCAGCCAATGGCAAGATCGCCAAGGACGCTAAGGACACAATGCAGGAGTGCGTTTCGGAATTCATCAGCTTCATCACCAGCGAGGCATGTGAGAAGTGCCAGAAAGAGAAGAGGAAGACCATCAATGGAGATGATTTGCTATGGGCGATGGCCACTTTAGGATTTGAAGACTACATAGAACCTCTTAAAGTGTACCTTGCAAGATTCAGAGAGTTGGAGGGTGACACCAAAGGATCTGCTAGAACTGGTGATGGATCTTTTAGACGAGATCAAGTTGGTCTAGCTGGTCAAAATACTCAGCTTGTTCATCAGGGTTCACTGAATTATATTAGTTCCCAGGTGCAGCAACAACACATGGTTATTCCTTCAATGCAAAGCCATGAATAA 540 0.5019 MADAPTSPAAGSHESGEEQSPQGSSSGGLGAREQDRFLPIANISRIMKKGLPANGKIAKDAKDTMQECVSEFISFITSEACEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARFRELEGDTKGSARTGDGSFRRDQVGLAGQNTQLVHQGSLNYISSQVQQQHMVIPSMQSHE 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120888g00007 179 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Stsc120888g00007 179 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Stsc120888g00007 179 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Stsc120888g00007 179 MobiDBLite consensus disorder prediction 12 29 - -
Stsc120888g00007 179 Gene3D Histone, subunit A 29 168 IPR009072 GO:0046982
Stsc120888g00007 179 SUPERFAMILY Histone-fold 34 157 IPR009072 GO:0046982
Stsc120888g00007 179 MobiDBLite consensus disorder prediction 1 32 - -
Stsc120888g00007 179 FunFam Nuclear transcription factor Y subunit B-3 27 150 - -
Stsc120888g00007 179 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc120888g00007 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc120888g00007 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120888g00007 Stsc-Chr120888 54890 57711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120888g00007 11 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.341 2.41e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc120888g00007 CBFD_NFYB_HMF 1.5e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120888g00007 K08065 - gmx:100779577 280.411