Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120887g00019 ATGCAGTTAAGGGTACTTGAGGAATTGTTCAGAAAAGGAACTGAGACTCCATCCACTTCACAAATCCAGAAGATAACTTCTCAGCTGAGACGCTATGGAAATGTTGAGGGCAAGAATGTCTTTTACTGGTTCCAGAATCACAAGGCTAGGGAGCGAAGGAAGCGCCGCCGCGCCGGCAACATAGAGGAAAGTGCTTCTTCTTCTGCCCAAGGGTTATCGAAAGCTAAAGAGACGAACTGCAGTTGTGGTGAACTTACAGAAGATCAGGAATCTGAAAGGAAGGATAATGAGCGCAGAAACATGGATTACTTGCAGATTATTTCCTCCATTAACACAGCAGCAACTACTTCTTCGGTGGCTTCAAAGATAACACAAAAGATTATTCAACTTCCAAGTAGTAGTAGTATTAGTCCTCAACTCAACTGCAAAGAAAATGAGGATGATAATGAGGATCCTCGAACTCTCGAGCTTTTTCCACTTAACAAGAAGGATGATGTAGGAGAAGAAGATAATAATAAGGGCCTCATTTCTTTGTCGGAGAGCAAATCAAAGAAATTCTGCGCCAATGAAGAAGAAGTCAGCTACCACCAGTTTTTTTGA 600 0.4217 MQLRVLEELFRKGTETPSTSQIQKITSQLRRYGNVEGKNVFYWFQNHKARERRKRRRAGNIEESASSSAQGLSKAKETNCSCGELTEDQESERKDNERRNMDYLQIISSINTAATTSSVASKITQKIIQLPSSSSISPQLNCKENEDDNEDPRTLELFPLNKKDDVGEEDNNKGLISLSESKSKKFCANEEEVSYHQFF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120887g00019 199 MobiDBLite consensus disorder prediction 62 80 - -
Stsc120887g00019 199 MobiDBLite consensus disorder prediction 81 97 - -
Stsc120887g00019 199 MobiDBLite consensus disorder prediction 52 97 - -
Stsc120887g00019 199 SUPERFAMILY Homeodomain-like 2 56 IPR009057 -
Stsc120887g00019 199 Pfam Homeodomain 2 53 IPR001356 GO:0003677
Stsc120887g00019 199 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 198 IPR044555 GO:0003700|GO:0099402
Stsc120887g00019 199 Gene3D - 1 60 - -
Stsc120887g00019 199 ProSiteProfiles 'Homeobox' domain profile. 1 54 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120887g00019 Stsc-Chr120887 119197 122756 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120887g00019 2 73 Wox Gene Family AT3G18010 68.000 2.47e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc120887g00019 Homeodomain 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120887g00019 - - vum:124827065 113.62