Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120887g00011 ATGGAGAACATTCTGGGTCTCATCAAGCTACGCATCAAAAGAGGAACTCATCTCAAAGCTTGTGATAATGATTCCAGTGACCCTTATGTCCTTGTCACCTTGGATGAAACGAAACTGAAAACTCGTACTGTGAATGATACCTTGAATCCTGAGTGGAATGAAGAATTGACACTCAAAATTAAGGATGTTAATCATCCCATTCATCTTACAGTTTGTGACAAAGACACTTTCACGAAGGACGACAAGATGGGGGAAGCCGATATCGACCTCAAGCCGTATCTTCTGTGTGTGAAGGTGGGACTAAGCGGGCTGCCGGAGGGGCAAGTGGTTAAGAAGATTGCACCAAGTGGCTCTAACTGCCTTGCTGAAGAGAGCAAGATAGTATGGACACATGGGAAAGTAATCCAATATTTGAACCTAAAATTGAGAAATGTTGCCACTGGCCAGCTTCATGTGGAAATTGAGTGGGCTGATGTTCCTGACTCTAAGGGCTTGTGTGCTGTTCCAATTTAG 513 0.4405 MENILGLIKLRIKRGTHLKACDNDSSDPYVLVTLDETKLKTRTVNDTLNPEWNEELTLKIKDVNHPIHLTVCDKDTFTKDDKMGEADIDLKPYLLCVKVGLSGLPEGQVVKKIAPSGSNCLAEESKIVWTHGKVIQYLNLKLRNVATGQLHVEIEWADVPDSKGLCAVPI 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120887g00011 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Stsc120887g00011 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Stsc120887g00011 170 PRINTS C2 domain signature 46 59 IPR000008 -
Stsc120887g00011 170 PRINTS C2 domain signature 22 34 IPR000008 -
Stsc120887g00011 170 PRINTS C2 domain signature 67 75 IPR000008 -
Stsc120887g00011 170 Pfam C2 domain 7 92 IPR000008 -
Stsc120887g00011 170 SMART C2_3c 7 102 IPR000008 -
Stsc120887g00011 170 Gene3D C2 domain 4 164 IPR035892 -
Stsc120887g00011 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120887g00011 Stsc-Chr120887 62603 64276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120887g00011 38 165 C2H2 Transcription Factor Family AT1G70790 52.308 1.17e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120887g00011 - - gmx:100781585 238.81