Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120886g00029 ATGATAAGGAGCATAATCCAAGACATGAGGTCCCGTTCACACCGCGTGGTTCAAGACTTGTCTTCCATGGAAGAAGATTCAGCAGCTTCAGAGCTGATCGCCGACGATGGCTTGAGGCAGAGTTGCTGGGCTCAGATGCCGCAGGAGCTGCTCAGAGAGGTGCTCATCAGGATCGAAGCGTCGGAGGCGGCGTGGCCACCGAGGAAGAGCGTCGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGGCACATCACTAAAGAGATCGTTAAGACTCCTGAGCTATCAGCAAAATTGACCTTCCCAATTTCTGTGAAGCAGCCTGGTCCAAGGGAGCATCTCCTTCAGTGCTTTATAAGGCGAAACCGGTCCACCCAAACATACTATTTGTATCTTAGCTTATCTAATACACTATCTGAAGATGGGAAGTTCCTCTTGGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATTATCTCTCTGCATGCAGATGACATGTCAAAGGGAAGCAACACCTATGTTGGAAAACTCAGATCAAATTTTCTCGGAACCAAGTTCACAATCTATGATGGCCAGCCACCACACGCCAGGGCAAAGATTACAAAGAGTCGCTCCACGAGGCTGGTGAATTTAAAACAAGTTGCACCCAAGGTTCCTACAGGCAATTATCCAGTGGCTCACATATCATATGAATTGAATGTGCTAGGCTCTAGGGGGCCCAGGAGAATGAACTGTGTCATGGATTCCCTTCCTGCTTCTGCAATTGAACCGGGAGGCGTGGCCCCTACACAGACCGAGTTTTCCCTCAGCAATGCAGATATGTTCCCCACATTCCCTTTTTTCCGATCAAGGTCGAATCGTGTGGACAACTCCCTTTCTGGACCCCTGGCTGATCAAAAGGATGGGGTTCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTGAACTTCCATGGGCGGGTGACAATTGCTTCGGTTAAAAACTTTCAGCTGGTGGCTTCACCAGAAAATGGACCTGCTGGACCAGAACATGATAAGATCATACTTCAGTTTGGAAAAGTTGGGAAGGATCTGTTTACAATGGATTATCGATATCCTATCTCAGCATTTCAGGCCTTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCATGTGAATGA 1188 0.4891 MIRSIIQDMRSRSHRVVQDLSSMEEDSAASELIADDGLRQSCWAQMPQELLREVLIRIEASEAAWPPRKSVVACAGVCRSWRHITKEIVKTPELSAKLTFPISVKQPGPREHLLQCFIRRNRSTQTYYLYLSLSNTLSEDGKFLLAARKCRRPTCTDYIISLHADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHARAKITKSRSTRLVNLKQVAPKVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSLPASAIEPGGVAPTQTEFSLSNADMFPTFPFFRSRSNRVDNSLSGPLADQKDGVLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120886g00029 395 PANTHER TUBBY-RELATED 21 393 - -
Stsc120886g00029 395 FunFam Tubby-like F-box protein 100 395 - -
Stsc120886g00029 395 SUPERFAMILY Tubby C-terminal domain-like 92 395 IPR025659 -
Stsc120886g00029 395 Gene3D Tubby Protein; Chain A 100 395 IPR025659 -
Stsc120886g00029 395 Gene3D - 37 94 - -
Stsc120886g00029 395 Pfam Tub family 104 390 IPR000007 -
Stsc120886g00029 395 ProSitePatterns Tub family signature 2. 380 395 IPR018066 -
Stsc120886g00029 395 SUPERFAMILY F-box domain 37 86 IPR036047 GO:0005515
Stsc120886g00029 395 CDD F-box_AtTLP-like 43 87 - -
Stsc120886g00029 395 ProSitePatterns Tub family signature 1. 325 338 IPR018066 -
Stsc120886g00029 395 PRINTS Tubby superfamily signature 373 395 IPR000007 -
Stsc120886g00029 395 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Stsc120886g00029 395 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Stsc120886g00029 395 PRINTS Tubby superfamily signature 325 341 IPR000007 -
Stsc120886g00029 395 PRINTS Tubby superfamily signature 307 324 IPR000007 -
Stsc120886g00029 395 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Stsc120886g00029 395 PRINTS Tubby superfamily signature 352 371 IPR000007 -
Stsc120886g00029 395 Pfam F-box domain 43 90 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120886g00029 Stsc-Chr120886 153620 157145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120886g00029 10 395 TUB Transcription Factor Family AT2G47900 71.722 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc120886g00029 Tub 1.6e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120886g00029 K19600 - gmx:100778346 677.937