Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120886g00023 ATGAACCAATACCATATCTACCAAGCAATTGGTCGCGGAAAATACTCCACCGTGTACAAAGGCAGGAAGAAGAAGACCATTGAGTATTTCGCCATCAAGAGCGTCGATAAGTCGCAGAGAAACAAGGTTCTTCACGAAGTAAAGATACTTCACTCTTTAGATCACCAAAACGTGCTCAAGTTTTATGAGTGGTATGAAACTTCTGCTCACTTATGGTTGATCTTGGAGTATTGCGTTGGAGGAGACTTACTTTCTATATTACGGCAGGCAAGAATCTTTTCTGCTGGTCAGGATAACCGACTTCCTGAAGATTCAGTTCATGATTTTGCTTTCGATCTAGTCAAGGCTTTGCAGTATTTACATTCAAATGGAATACTTTATTGTGACGTTAAACCATCAAACATCCTACTAGACGAAAATGGGTGCGCAAAGTTATGTGATTTCGGATTGGCTAGAAAGGTGAAAGATATAAAAGTTGCTTCTGCGTTGCCTCAAGCCAAACGTGGAACACCTTCTTACATGGCTCCTGAACTTTTTGAGGACGGTGGAGTCCATTCTTATGCCTCAGATTTCTGGGCCCTGGGTTGTGTATTATACGAATGTTATGCTGGGAGACCTCCTTTTGTGGGAAGAGAATTCACTCAGCTTGTGAAGTCCATCCTTTTGGATCCAACTCCTCCTCTCCCTGGTAATCCAAGTCGTCCCTTTGTCAATTTAATTAATTCTCTGTTGGTAAAAGATCCAGCTGAGAGAATACAATGGCCTGAGCTTCGTGGTCACGCTTTTTGGAGAACCAAACACACTATGATGCCCTTGCCTGCTCAACCTGCGTTTGATGATATGATAGAGCAACAGGCTAAACCATGCGGTGATAAGTCGTCTCAAAACAGGACCCCTTCAAAGTATCGTGAAAAAGATGCAAAGGGGGTGTTGAAGAAGGATGAGAATTCAATTTTAGGGTCTAGAGGCATGGAGACACCAAATAGGGCAACACCTAGTAGCCATAGAACACTTACAAAGGGTTGTGGCAGAACAGTTGAGGCAAAGCAAAAGGATCCTTCCAATATTGGCAAAAGAGTGAATCTCTTGAGATTGTCAAAAATTGTGAAATCTAATCTACATAAAGAAAATGACAAGGAAAATTACAGGCGCCCCTTACCTAATAATGCTGAGAATGATTCTGAAGTCAAAATTGAGGACATTGACATGGAACTTGATTTTGATGAGAGTACAGAAGATGATGCACCTGAGGAAGCTGATGGCTCTGAACATACAACTTCTGTCTGTGATGAGAATCCAGGAAAAGCAGAAGAGTTTGAGAGCAATATTAACCACTTGGATGCCTCACCTATTGTTGACACACCTGTCTCAAATGATCCGAGATTAGATCATGAGTCAACTCCTGATCATCCTGACATATCTGCTATTTCTCCTAGTGTGAGCCCTCAGGTGAAGAAGCATAGAGTTAAAGATGACTCAGGATCTGGTCTTGACACAGATTCTTCAAGGCCATCTAACAACTTCTCCCAAGTTCTTTGGCATGCATCTGATCTCTCAGTTAGACCAGTGATGCCGAGCAGAAAAGTTGATAAAGTCTCAGAAACCATTCCTTCACTTCCGTTTGAAACTTTGAAAGCAGCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTCCAAAACCGAATTATAACCATTCTGAATGGGAATACAAGCATTGGGGAGAAACAGAATGTGATTAGGTATCTTGAGATGTTAAGTGGTAATGCTGATGCAGCTAATATATTGACCAATGGCCCAATAATGCTCATGCTTGTGAAATTGCTTCGTCAATCCAAGGCATCAGCTCTGCGCGTTCAACTTGCTTCACTTATTGGTTTGTTGATTCGGCACTCTACTGTTATTGATGACAGTTTGGCAAATTCTGGAATTTTAGGCTCGTTGACTGACAGCCTTAGAGACAAGCAGGAAAAAGTGAGGAGATTTTCCATGGCTGCTTTAGGTGAGTTGCTATTCTATATATCCACTCAAAATGCCGACTGCAGTAAAGACAACATTCCACTTGAATCTCCATCAAAGGACAGTAGGACTACATGTGGCTGGCAGGTTACAAATGCATTATTATCATTAGTGTCATCAATGCTGAGGAAGGGTGAGGATGATATAACTCAATTGTATGCATTGAGAACAATTGAGAATATTTTCAGTCAAGGAGGGTTGTGGGTGGGACGTTTGAGCAGTCAAGATGTCATTAGCAATCTTTGCTATATCTATAGGGCGGCAGGGAAACAAGAGAGCATGAGGCTTACCGCAGGATCATGCTTAGTGCGGTTAGTTCGGTTTAACCCTCCTAGCATTCAATCGGTTGTAGAGAAACTGTCATTCAAGGACCTTGCTTCAGCCGTTGTCAAGGGCAGTCCAAGAGAGCAGCAAGTCAGCCTAAATCTTCTTAACATGGCAATGCTTGGAAGTCACATGTTGACAAGTATTGGAAGATACCTCACAGCTCTTGTGGAGGACAAGAATTTGATCCCAAGTCTTTTGTCTCTTGTTGAGCAGGGTAGTGAAGTTCTAAAAGGAAAGGCACTTTTCTTTGTGGCTCTCCTTTGTAAGCATGGTAGGAGGTGGCTTCCACACTTCTTTTGTAGCCAAAAGCTACTTTCTGTAGTGGACAGGCTAGGAAAAGAAAAGGATACATATGTGCAGCAGTGTTTAGATGCATTTGTTAACATTGTTGCGTCAACTATTCCCGGTTTGCTAGATATAATAACTGGGGACATCCAACAAATGATGGGTGGAAGGCGCCATGGACATATTTCAGCTCTTTCCAGCAGATCTGCTCCAAAAACCAACATTCATTTGTTCCCGGTTGTCCTTCATCTTCTTAGCACTTCAACATTTAAACACAAAGTGGTGACAGTTCAAGTCCTACGGCAGCTGGCCAATCTAATTAAACTCATTGAGACACCGTNNNNNNNNNNGAACGACTTCCAAATAACCCTTCTTCGCATTTTGGAGTCTGTCACGGAGGAATCTCGTGTGATTTTTGGCAACCCGGATATTTTCATTCGTGAAATACTCCCCAGTTTGACAGATCTATACAAGGGTAACAAGGACGGCGATGCTAGATTTTTGTGTCTTAAAATCTTTTTTGATGTGATGATTATTCTTTTAAGTGAACCAATTGAAGAAGAACAAAGATTGAAGGATCTGAAATTCATATCAAACACCTGTTTTCTTCCTCTCTACCCAACTTTTATTGAAGATGAAGATCCTATTCCCATCTTTGCGCAGAGGCTTCTTGTTATGCTGCTAGAGTTCAGTTTTATTACAATTCCCGATATTCTACACCTGAAGATAATTTCACAATGCTTTGAGTTTTTGCTTGGTGATCTCTCAAATGCAAATGTGAATAATGTCAAGCTTTGTCTGGCTCTGGCTTCTGCTCCTGAATTGGAGACCAAGTTACTGTCTCAATTGAAAGTGGTTAGGAGGATTGGCAACTTTCTTGAATTCGTATGTGCAAAGGAGATGGAAGATTTGTTGGAACCAACTCTCGGGCTGTGCATGGCTTTTCTAGCACGTTCAGTCACCTGTGCAAAAGAGCCTACTCTCTTAGGTGACGGTCCTCCCGAGGTGAGTGGTGCTGTTGATCCCCAACAATCCATTAGAGACATAATGGATTTCGGAAGCAATGTTAGTGTCATGCTAGCCTTAAGTGCATCTACAAAAACCAACATTGCTGACATAGCTTCCAAATGTGTGGTTTTACTTCTGAAGGCGGCTCCTCGAGAAGCCACCACTGGTCTACTAACGAATCTCCCCAAGGTGAGTGTGATCCTAGAGTCATGGAATAGAGGAATCCCTCACCTAATTGTGCAGCGAATGCTTCATGCTCTTGGTTATGGTTGCAAGCAGTACTTACTGCATGCAATGATATTGTCAATATCCATGCCAGAGATCTCAAGAATTGAAGCGATTGTTTCTGAACTAAAGAGTTCAGGTGTTCCTGGTTTAGCCAAAACTGCTACACTGGCTGCCATGGAATTGCAGCGGCTGCCACGCTGCATTTGA 4077 0.4219 MNQYHIYQAIGRGKYSTVYKGRKKKTIEYFAIKSVDKSQRNKVLHEVKILHSLDHQNVLKFYEWYETSAHLWLILEYCVGGDLLSILRQARIFSAGQDNRLPEDSVHDFAFDLVKALQYLHSNGILYCDVKPSNILLDENGCAKLCDFGLARKVKDIKVASALPQAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSILLDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELRGHAFWRTKHTMMPLPAQPAFDDMIEQQAKPCGDKSSQNRTPSKYREKDAKGVLKKDENSILGSRGMETPNRATPSSHRTLTKGCGRTVEAKQKDPSNIGKRVNLLRLSKIVKSNLHKENDKENYRRPLPNNAENDSEVKIEDIDMELDFDESTEDDAPEEADGSEHTTSVCDENPGKAEEFESNINHLDASPIVDTPVSNDPRLDHESTPDHPDISAISPSVSPQVKKHRVKDDSGSGLDTDSSRPSNNFSQVLWHASDLSVRPVMPSRKVDKVSETIPSLPFETLKAADFVKMPKEQLEAVQNRIITILNGNTSIGEKQNVIRYLEMLSGNADAANILTNGPIMLMLVKLLRQSKASALRVQLASLIGLLIRHSTVIDDSLANSGILGSLTDSLRDKQEKVRRFSMAALGELLFYISTQNADCSKDNIPLESPSKDSRTTCGWQVTNALLSLVSSMLRKGEDDITQLYALRTIENIFSQGGLWVGRLSSQDVISNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQSVVEKLSFKDLASAVVKGSPREQQVSLNLLNMAMLGSHMLTSIGRYLTALVEDKNLIPSLLSLVEQGSEVLKGKALFFVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDTYVQQCLDAFVNIVASTIPGLLDIITGDIQQMMGGRRHGHISALSSRSAPKTNIHLFPVVLHLLSTSTFKHKVVTVQVLRQLANLIKLIETPXXXXNDFQITLLRILESVTEESRVIFGNPDIFIREILPSLTDLYKGNKDGDARFLCLKIFFDVMIILLSEPIEEEQRLKDLKFISNTCFLPLYPTFIEDEDPIPIFAQRLLVMLLEFSFITIPDILHLKIISQCFEFLLGDLSNANVNNVKLCLALASAPELETKLLSQLKVVRRIGNFLEFVCAKEMEDLLEPTLGLCMAFLARSVTCAKEPTLLGDGPPEVSGAVDPQQSIRDIMDFGSNVSVMLALSASTKTNIADIASKCVVLLLKAAPREATTGLLTNLPKVSVILESWNRGIPHLIVQRMLHALGYGCKQYLLHAMILSISMPEISRIEAIVSELKSSGVPGLAKTATLAAMELQRLPRCI 1358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120886g00023 1358 Pfam Protein kinase domain 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120886g00023 1358 MobiDBLite consensus disorder prediction 420 442 - -
Stsc120886g00023 1358 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc120886g00023 1358 Gene3D Transferase(Phosphotransferase) domain 1 1 322 - -
Stsc120886g00023 1358 CDD STKc_ULK4 3 263 - -
Stsc120886g00023 1358 FunFam Aurora kinase A 1 81 - -
Stsc120886g00023 1358 MobiDBLite consensus disorder prediction 374 508 - -
Stsc120886g00023 1358 ProSiteProfiles Protein kinase domain profile. 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120886g00023 1358 SMART serkin_6 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120886g00023 1358 MobiDBLite consensus disorder prediction 297 319 - -
Stsc120886g00023 1358 SUPERFAMILY Protein kinase-like (PK-like) 1 277 IPR011009 -
Stsc120886g00023 1358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Stsc120886g00023 1358 MobiDBLite consensus disorder prediction 321 339 - -
Stsc120886g00023 1358 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1355 IPR044591 GO:0000911|GO:0000914|GO:0008017
Stsc120886g00023 1358 Gene3D - 555 984 IPR011989 -
Stsc120886g00023 1358 MobiDBLite consensus disorder prediction 397 419 - -
Stsc120886g00023 1358 SUPERFAMILY ARM repeat 564 914 IPR016024 -
Stsc120886g00023 1358 MobiDBLite consensus disorder prediction 282 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120886g00023 Stsc-Chr120886 118733 125274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120886g00023 2 264 MAP Kinase Kinase Kinase AT3G13530 31.343 1.49e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Stsc120886g00023 Pkinase 1.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120886g00023 K17545 - gmx:100777288 2248.4