LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120886g00021	ATGGAATGCAATAAAGAAGAGGCCTTAAGGGCTAAGGATATTGCCATAAAGAAGATGGAAAGCAAGGATTTTCCAGCGGCGCATAAATTTGCTCTTAAGGCTCAGAAGTTATTCCCTGATCTGGAGAATATTGGTCAAATGCTTGCTGTTTGTGATGTACATTGCTCTGCAGAGCAAAAATTATATGGTAATGAGATTAACTGGTATAAAGTTCTTCAGATTGAGATGACGGCCGATGAGGTAATGATTAAGAAGCAATACAGAAAGTTTGCTCTCCAACTTCATCCTGACAAGAACAAGTTTGCTGGTGCAGAAGCTGCATTCAAGCTGATTGGGGAAGCCCAAAGAGTGCTTTTGGATAGAGTAAAACGATCTGACCTTGACAGAAAGTGCAGGGTTGCAATGAACAACACTGCTATGCCATCTCATCAACGACAGACAGCTCACATGAATTATAAATCTACATATAATGTCAAGCCGAAGGTTACTCCCAACAATCCACGGCAGGGGCAACAGGTCTTTATTGCATATGATGTTGGTAGTAGACGTGCAACTCCGGCAACTAATCCTAGTCAGCAAACTTCTGGCCAGCAGAATAATGGTTTCAATCATGGTGCTTCCAATGTAAATGTTGGGTCTCAAGGTAGTGTGCATGCTAACAGGTCCAATACAGAGTCTAGGGGGAAAAAGCGTCCTAGTTCAGATGCCTCAAGGAAGCCTACTGGAAAGAGAAGGAAGCAGGAATCCAGTGAAAGTGCTGATTCGTCTAGCAGTGATTCAGAAGCTGATGTGGTTGCTAAAGATAATGGTTTTACTGATGTACAAAAGAATACAGCTTTTAGAGAAAATCAGCCACGTAGATCTGCACGTCGAAAGCATCAGGCATCAAGCAAGGTGAATGCTGTTGTAAGTGACAATGATGATGACGATGATAGTGGTGACGACGATGATAGTGGTGACGAGGATTCATTTCAACCTTCAAGGGGGGATAAGACGAATGGATCATCAAATCATGTTGGTGAAATGAATAATCAGAATGGTTTAGCTTCAGAAAATGAGGAAATCAAGGAGATGAGGGGAAAGGAAGCTGTTGGAGGTTCAAACATGGATGAAGCTTCAGCGAATCTTGTCTATCCCGATCCACAGTTTAGTGACTTTGACAAGGACAAGAAGGAGGAGTGTTTTGCAGTTGGGCAGGTTTGGGCTATGTATGATACTACAGATGGCATGCCTAGATTCTACGCCTTGATTAAAAAAGTTCTCTCACCTGGATTCAAGTTGAAGATACAATGGTTTGAGCCAGATCCAGATGACGAGGATGAAATCAAATGGTCAGATGAGGAATTGCCAATTGCGTGTGGGAAATACAAACTTGGCAAAAATGAAACTGCTGAAAATCGTGACGCATTCTCCCACCTGATTATTTGGGAAAAAATTGGCCGCAACGCTTTTAAAGTGTACCCTAGAAAGGGAGAAACTTGGGCTTTGTTTAAAGACTGGGATATTAAATGGCATTTGGATGCAGAATCTCATCAGAAGTATGATTTTGAGTTCGTTGAAATCTTGTCAGATTTCGTTGAAGGTGAAGGAGTAGATGTTGCACACGTGGCTAAGTTGAAAGGTTTTGTGAGCCTCTTCTATCCAATTATGAAGGAACCTAATTCCTCATTCAGAATACCGTCAGCACAGTTATTCAGATTTTCTCACAGGGTGCCTTCTTTTAGGATGACTGGTCAGGAGGGATTAGGTGTTCCTGTGGGATCTTTTGAATTTGATCCTTTGTCACTGCCTATGAATCTGGAAGAGATTGATCTTCCACAAGATTTAAAAGCAAAATCTAGTCACAGTCCTTCTGTTAGGGTGAGCACTAGGTCTTCAGATGCCACAAAATCCAAAATGAAATCTGACGGTGATGCATCTCCATCTAAGGTTAATTTGGGAAGAGGAAACTCAACAGTAAAGAACAAAGCTTCTGTTGATCATATTGATGATGGTGTTGGTCCTTCTGAATCTGCCACATCAGCTATTGAAATACCTGACCCTCAGTACTTCAATTTTGATGGCGAGAGGACCCCTGAAAAATTTCAGATTGGCCAGGTTTGGGCATTTTATTGTGACGAAGATGGGTTGCCAAAGTACTACGGTCTGATTACAGGTGTTAGGACTAGCCCCGATCTTGATGTGCGTGTTACTTGGCTTACTAATGACTTGCCACCAGAGGATGCCGAAAAATGGGAAGACAAGGAGATGATCATTTCCTGCGGACAATTTAAAGTGGTAACTAGAGGTAGAAGTTCCATTGCCTACAAAGACACCCATTCTTTTTCTCATGAGCTGCGTCCTGTTGATGGTATTGGTAAGAATAAGAAATATACTATTCTTCCTAGAAAAGGTCAAGTTTGGGCACTATATAAGAAATGGACAGCTAAAATCAGAAGCTCAGATTTGTCAAACTGTGAGTACGACATAGTCGAAGTTGTTGAAGAGAGTAGTAGCTCGGGGATAAATGTTTTATATTTGGAGAAGGTGAGTGGTTATAATTCAGTTTTTAAGGCCAAATCCAGTGGAAGATCATCTGCAACCATACCTTCCAGAAAATTGCTTTCATTCTCCCACCAAATCCCAGCTTTCAGACTCACAGAAGAACATGGTGACTTGGCAGGTTTGCTTGAACTTGATCCTGCAGCACTTCCAACTCATTATTTTAGCTCCAAATGA	2718	0.4165	MECNKEEALRAKDIAIKKMESKDFPAAHKFALKAQKLFPDLENIGQMLAVCDVHCSAEQKLYGNEINWYKVLQIEMTADEVMIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDRVKRSDLDRKCRVAMNNTAMPSHQRQTAHMNYKSTYNVKPKVTPNNPRQGQQVFIAYDVGSRRATPATNPSQQTSGQQNNGFNHGASNVNVGSQGSVHANRSNTESRGKKRPSSDASRKPTGKRRKQESSESADSSSSDSEADVVAKDNGFTDVQKNTAFRENQPRRSARRKHQASSKVNAVVSDNDDDDDSGDDDDSGDEDSFQPSRGDKTNGSSNHVGEMNNQNGLASENEEIKEMRGKEAVGGSNMDEASANLVYPDPQFSDFDKDKKEECFAVGQVWAMYDTTDGMPRFYALIKKVLSPGFKLKIQWFEPDPDDEDEIKWSDEELPIACGKYKLGKNETAENRDAFSHLIIWEKIGRNAFKVYPRKGETWALFKDWDIKWHLDAESHQKYDFEFVEILSDFVEGEGVDVAHVAKLKGFVSLFYPIMKEPNSSFRIPSAQLFRFSHRVPSFRMTGQEGLGVPVGSFEFDPLSLPMNLEEIDLPQDLKAKSSHSPSVRVSTRSSDATKSKMKSDGDASPSKVNLGRGNSTVKNKASVDHIDDGVGPSESATSAIEIPDPQYFNFDGERTPEKFQIGQVWAFYCDEDGLPKYYGLITGVRTSPDLDVRVTWLTNDLPPEDAEKWEDKEMIISCGQFKVVTRGRSSIAYKDTHSFSHELRPVDGIGKNKKYTILPRKGQVWALYKKWTAKIRSSDLSNCEYDIVEVVEESSSSGINVLYLEKVSGYNSVFKAKSSGRSSATIPSRKLLSFSHQIPAFRLTEEHGDLAGLLELDPAALPTHYFSSK	905

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120886g00021	905	MobiDBLite	consensus disorder prediction	223	252	-	-
	Stsc120886g00021	905	Gene3D	DnaJ domain	65	219	IPR036869	-
	Stsc120886g00021	905	Pfam	Domain of unknown function (DUF3444)	675	882	IPR024593	-
	Stsc120886g00021	905	Pfam	Domain of unknown function (DUF3444)	375	580	IPR024593	-
	Stsc120886g00021	905	MobiDBLite	consensus disorder prediction	184	222	-	-
	Stsc120886g00021	905	MobiDBLite	consensus disorder prediction	306	321	-	-
	Stsc120886g00021	905	SUPERFAMILY	Chaperone J-domain	62	134	IPR036869	-
	Stsc120886g00021	905	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	606	-	-
	Stsc120886g00021	905	SMART	dnaj_3	66	123	IPR001623	-
	Stsc120886g00021	905	CDD	DnaJ	67	120	IPR001623	-
	Stsc120886g00021	905	MobiDBLite	consensus disorder prediction	183	351	-	-
	Stsc120886g00021	905	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Stsc120886g00021	905	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Stsc120886g00021	905	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Stsc120886g00021	905	MobiDBLite	consensus disorder prediction	328	351	-	-
	Stsc120886g00021	905	MobiDBLite	consensus disorder prediction	611	626	-	-
	Stsc120886g00021	905	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Stsc120886g00021	905	MobiDBLite	consensus disorder prediction	608	678	-	-
	Stsc120886g00021	905	Pfam	DnaJ domain	67	128	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120886g00021	Stsc-Chr120886	91400	94258	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120886g00021	4	128	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	45.385	2.35e-23	100

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120886g00021	-		-	ahf:112741095	1423.68