Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120886g00020 ATGGATTGCAATAAAGAAGAGGCTTTAAGGGCTAAGGATCTTGCCGAAAAGAAGATGCAAGGCAAGGATTTCTTGGGTGCTCGTAAATTTGCTCTCAAGGCTCAGCAGTTATTTCCTGATGTGGAGAATATTGCTCAGATGCTTGTTGTTTGCGATGTGCATTGCTCTGCGGAGCAGAAGTTGTATGGTAATGAGATGAACTGGTATAAAATTCTTCAGATTGAACTAACGGCTGACGAGGCAACAATTAAGAAGCAGTACAGGAAGTTTGCTCTCCAACTTCATCCTGACAAAAACAAGTATGCTGGTGCAGAAGCAGCGTTCAAGTTGATTGGGGAAGCACAGCGAGTGCTTTTGGATAAAGAAAAACGCTCTGAGCTGGACAGGAAGTGCAGGGTTGCAATGCACAGACCTACCATGGCACCTCATCATCAACAGAAGCCACCGATGAATTATAATTCTGTGGCGCAAAACACTGTGAGGCCTAACTTTACGAACTTTAATCCTTGGCAGCCGCAGCAACAACAGTCAACTCAATCTTCTCAACAGGGGATTAATGGTGGCCGCACTACCTTCTGGACTGCATGCTCATTTTGTTCGGTTAGATATGAGTATTATAGGGAAGTTTTGAATAGATCTCTTCGCTGTCAACATTGCAATAAGCCCTTTATTGCGTATGATATGGATGTTCAAGGTACAACCCCAGCAGCTAATCCAGGTCAGCAAGCTTTCACCCAGCGGACATATGGCCTCAATCATGGTGCTGTTAAGGTGGATGTTGGAGCTCAAGGTAATCTACGTACAAAGAAATCCAATACTGAATCGAGTACAAAGAAGTCCAATACAGAATCTAGTGCAAAGAAGTCCAATACAGAATCTAGGGCAAACAAAGGCTCTAGTTCTGATGTCTCCAAAAATCCAAATGGAAAGAGGAGGAGGAAGCAGATGGTTGAATCCAGTGAAAGTGCTGATTCGTTAAGCAGTGATTCTGAAGATGAGATGTTTGCTAACAATGATTGTTTTCCTGATGTACAAAAGAATTCAACTTCAAGAGAAGAGCGTCCACGGAGGTCTACACGGCAAAAGCACCATGTTTCCTACAATGAGAATGCAAGTGACGGGGACAACGACGGATCATTTGAGCCTGCAAGAAGGGATACCGAGGGTGGATCATCAAACCCTGCTAATGAAATGAATAATCAAAATGGTTTAGCCTCTGGTCTGAAAGCTAATAAAAAAGGTGCAAAGCGCGACTCTGAAGAGGACTTGGTAAATAGAAATGCGGAAATTAAAGAAGTGAGGGGTGAAGAAGCAGTGGGTGATGAAGCTTCAGAGAATGATGTCTATCCTGATCCAGAGTTCAGTGACTTCGACAAGGACAAGAAAGAGGAATCTTTTAAACCTGGGCAGATTTGGGCTGTTTATGATATGACAGATGGCATGCCTAGATTTTATGCTTTGATAAAAAAAGTTATGTCCCCTGGATTCAAGTTGCAGATAACATGGTTTGAACCAGATCCAGTTGATGATGATGAAATCAGCTGGTCGATTAAGCAATTGCCAATTGCATGTGGAAAATTTAAACTTGGTAGCTTGGACTTCATTGAAGGCCATGAGACATTCTCACATCGGATTATTTGTCAAAAAGTTGGCCGGACTTTTTTCTACGTGTACCCTAGAAAGGGAGAAACTTGGGCTCTTTTTAAAAACTGGGATATTAAATGGCATAAGGATCCGGAATCCCATCGGAAGTTTGAGTTTGAGTTTGTTGAAATCTTGTCAGAGTATTTTGAAGGTGAAGGAGTAACAGTTGCATCCTTGGCGAAGTTGAAAGGCTTTGTGAGTCTCTTCTATCCTATTATGAAGGACGGTAAACCATATTTTCAAATACCAGCAGCGCAGTTGTTCAGATTCTCTCACAGGGTTCCGTCTTTTCGGATGACTGGTAAGGAAAGAGTAGGTGTTCCTGCGGGATCTATGGAACTTGATCCTGTATCCTTGCCTAGGAATATGGATGAGATTGATGTTCCCCAAGGTTTAATAGGGAAAATTAGTCAAAGTCCATCTGTTGGGATGAGTTCAAGGTCTCCAAACGCCTTGAAATCCATGACAAAATCTGACACAGATGCATCTACTTCTAAGATTAATTTGGAAGGTGGAAATTCAACGGCAAGGACCAAGGCTCCTGGTGATCATATTGCTAATGGTAGCGCTCCTTCAGCTTCAGTGGCAGCAGCTATTCAAGTACCCAAACCACAGTTTTTCAATTTTTCCCCTGGAAAGCTTGCTCCTGGTCAGATTTGGGCATTTTATGACGAAAAGGATGGAGCGCCAAGGAATTATGGTCTGATTATACGGGTTAATACAAGCCCAGATTTTGAGGTGCATGTTATGAATCTTACTAATTGCTGGCTACCAGATTCTGCTGGTAAATGGGAAGACAGGAAAATGATCGTTCCGTGCGGACGATTTCGGATTATACCAAGTCCAGTTTACCGTATTTATACGAACACCGATTCCTTTTCCCATCTGCTGCATCCTGTTACTGATGGTGCTGGCAAGGAGAAGGAGTACATCATATTCCCAAGGAAAGGTGAAGTTTGGGCATTATATAGGAAATGGTCAAGCAAAATCAAGCGTGCTGATTTGTCAAAGATGGAGTATGACTTGGTGGAAGTTCTTGAAGAAGATAATTATAGTTTGGGGACAGCAGTTTTGCCTTTGGAGAAGGTGAGTGGTTATCATTCAGTATTTAAGGGCAAACCAAATGGGAGATCATCTGCAACCCTGAGAATACCTAGTAGAAAATTGCTCATGTTCTCCCACCCAATCCCAGCATTCAGACTCACAGAAGAACATGGCAATCTGAAAGGTTTCCTGGAAATTAATCCTCGAGCACTGCCTTCTCATTATTTAAATAATAATGGTAGATGA 2934 0.424 MDCNKEEALRAKDLAEKKMQGKDFLGARKFALKAQQLFPDVENIAQMLVVCDVHCSAEQKLYGNEMNWYKILQIELTADEATIKKQYRKFALQLHPDKNKYAGAEAAFKLIGEAQRVLLDKEKRSELDRKCRVAMHRPTMAPHHQQKPPMNYNSVAQNTVRPNFTNFNPWQPQQQQSTQSSQQGINGGRTTFWTACSFCSVRYEYYREVLNRSLRCQHCNKPFIAYDMDVQGTTPAANPGQQAFTQRTYGLNHGAVKVDVGAQGNLRTKKSNTESSTKKSNTESSAKKSNTESRANKGSSSDVSKNPNGKRRRKQMVESSESADSLSSDSEDEMFANNDCFPDVQKNSTSREERPRRSTRQKHHVSYNENASDGDNDGSFEPARRDTEGGSSNPANEMNNQNGLASGLKANKKGAKRDSEEDLVNRNAEIKEVRGEEAVGDEASENDVYPDPEFSDFDKDKKEESFKPGQIWAVYDMTDGMPRFYALIKKVMSPGFKLQITWFEPDPVDDDEISWSIKQLPIACGKFKLGSLDFIEGHETFSHRIICQKVGRTFFYVYPRKGETWALFKNWDIKWHKDPESHRKFEFEFVEILSEYFEGEGVTVASLAKLKGFVSLFYPIMKDGKPYFQIPAAQLFRFSHRVPSFRMTGKERVGVPAGSMELDPVSLPRNMDEIDVPQGLIGKISQSPSVGMSSRSPNALKSMTKSDTDASTSKINLEGGNSTARTKAPGDHIANGSAPSASVAAAIQVPKPQFFNFSPGKLAPGQIWAFYDEKDGAPRNYGLIIRVNTSPDFEVHVMNLTNCWLPDSAGKWEDRKMIVPCGRFRIIPSPVYRIYTNTDSFSHLLHPVTDGAGKEKEYIIFPRKGEVWALYRKWSSKIKRADLSKMEYDLVEVLEEDNYSLGTAVLPLEKVSGYHSVFKGKPNGRSSATLRIPSRKLLMFSHPIPAFRLTEEHGNLKGFLEINPRALPSHYLNNNGR 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120886g00020 977 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Stsc120886g00020 977 SUPERFAMILY Chaperone J-domain 62 132 IPR036869 -
Stsc120886g00020 977 MobiDBLite consensus disorder prediction 265 305 - -
Stsc120886g00020 977 MobiDBLite consensus disorder prediction 163 185 - -
Stsc120886g00020 977 MobiDBLite consensus disorder prediction 320 334 - -
Stsc120886g00020 977 MobiDBLite consensus disorder prediction 685 723 - -
Stsc120886g00020 977 SMART dnaj_3 66 123 IPR001623 -
Stsc120886g00020 977 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 677 - -
Stsc120886g00020 977 PRINTS DnaJ domain signature 103 123 IPR001623 -
Stsc120886g00020 977 PRINTS DnaJ domain signature 69 87 IPR001623 -
Stsc120886g00020 977 PRINTS DnaJ domain signature 87 102 IPR001623 -
Stsc120886g00020 977 Pfam Domain of unknown function (DUF3444) 746 952 IPR024593 -
Stsc120886g00020 977 Pfam Domain of unknown function (DUF3444) 448 651 IPR024593 -
Stsc120886g00020 977 CDD DnaJ 67 120 IPR001623 -
Stsc120886g00020 977 MobiDBLite consensus disorder prediction 685 737 - -
Stsc120886g00020 977 Gene3D DnaJ domain 64 188 IPR036869 -
Stsc120886g00020 977 MobiDBLite consensus disorder prediction 411 441 - -
Stsc120886g00020 977 MobiDBLite consensus disorder prediction 260 461 - -
Stsc120886g00020 977 MobiDBLite consensus disorder prediction 389 407 - -
Stsc120886g00020 977 Pfam DnaJ domain 67 128 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120886g00020 Stsc-Chr120886 83190 86123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120886g00020 4 225 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.480 5.06e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120886g00020 - - ahf:112741095 1129.01