Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120886g00017 ATGCAAGCATCAGCAACTGATGAAGTCTCTGAGAATGCACCCCAGACTAACCACCATACGAACAAAGAAGTTTCGGATAATAGACCAAGTGGGAAACGCCCTGATATTTCACTTCAAGTTCCGCCTAGACCCGTAGGGTTCGGAAGCACTTGTGGTGGAAGGGCTTTGGACCATTCTCAAAGTTTCTCCAAAAGCCTCTCATCATCAAGAGGTTTTTTGCGAGCATTGAGCTTCAAAAGAAAAGCTAATGTAACAGATGGCGAAAGAAGCTGCCTCCTTAATTCGGACCCTAAGACATCTGCAGACAGTTCTAATATGGACTCCATATCTGAAGCTGCATGGAAAAGATGCACTTCTCTTCCTGTTACTCCTGCATCAACTTTGTCTCCTTCGGTCTCAACACCTGTTTCTGCAAGGACTTATACTGAACAGACTAAGCAGCATAAAGATGATGGTCGTTCCAAGGTTTCAAGGTCACTTTCTGTACCTGGGAGAAATGTTGTTATTGTAAGATCCATCTCTTTTTCTACCCGTAGTGAACAGGATCAGCAAGATGCAAACGATGATCAGATAACTCCTGTGCCACCCGAAGGTGCTGATGATGAAGAAATTCCTGAAGAGGAAGCCGTCTGCAGGATATGTCTTGATGTCTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTCAGACTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGAAGTATGCGGGCACGAGGTTCAGAATTTACCTGTAACCTTGCTTCGTGTTTCCAGCTCTGTTCAACGGCAAAGTAGACAACTGCAGGGTCAACAGAACCTAAGTTCAGAGTCAATAAATGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTTCTGCTTCCTGAGTTGAAGACTCAAGCCATCATAATAGCAGCACCATTTGCCTTTACGTTGGGCCTCCTGGCATCCATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTCGCTCTTGTGGCTATAACTGTGCATCTGTTTTATACTATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGAGCATCAACTATTTATATATCCAANNNNNNNNNNACAGGTTTCTCACAGTGATAACCTCCCAGTTTGAATTTCCTAAGAAGTGA 1272 0.4237 MQASATDEVSENAPQTNHHTNKEVSDNRPSGKRPDISLQVPPRPVGFGSTCGGRALDHSQSFSKSLSSSRGFLRALSFKRKANVTDGERSCLLNSDPKTSADSSNMDSISEAAWKRCTSLPVTPASTLSPSVSTPVSARTYTEQTKQHKDDGRSKVSRSLSVPGRNVVIVRSISFSTRSEQDQQDANDDQITPVPPEGADDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGHEVQNLPVTLLRVSSSVQRQSRQLQGQQNLSSESINAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAITVHLFYTMLHLKAIYAILLSSVLGFGIAMSINYLYIQXXXXRFLTVITSQFEFPKK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120886g00017 423 PANTHER OS02G0165000 PROTEIN 30 409 - -
Stsc120886g00017 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 266 IPR013083 -
Stsc120886g00017 423 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120886g00017 423 SMART ringv_2 210 258 IPR011016 GO:0008270
Stsc120886g00017 423 MobiDBLite consensus disorder prediction 1 64 - -
Stsc120886g00017 423 MobiDBLite consensus disorder prediction 86 107 - -
Stsc120886g00017 423 ProSiteProfiles Zinc finger RING-CH-type profile. 203 264 IPR011016 GO:0008270
Stsc120886g00017 423 MobiDBLite consensus disorder prediction 124 142 - -
Stsc120886g00017 423 MobiDBLite consensus disorder prediction 178 202 - -
Stsc120886g00017 423 SUPERFAMILY RING/U-box 207 261 - -
Stsc120886g00017 423 CDD RING_CH-C4HC3_MARCH 211 258 - -
Stsc120886g00017 423 MobiDBLite consensus disorder prediction 124 158 - -
Stsc120886g00017 423 MobiDBLite consensus disorder prediction 88 107 - -
Stsc120886g00017 423 Pfam RING-variant domain 211 257 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120886g00017 Stsc-Chr120886 67002 70571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120886g00017 164 318 C3H Transcription Factor Family AT2G37950 29.412 4.05e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120886g00017 - - gmx:100527094 608.216