Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120886g00017 | ATGCAAGCATCAGCAACTGATGAAGTCTCTGAGAATGCACCCCAGACTAACCACCATACGAACAAAGAAGTTTCGGATAATAGACCAAGTGGGAAACGCCCTGATATTTCACTTCAAGTTCCGCCTAGACCCGTAGGGTTCGGAAGCACTTGTGGTGGAAGGGCTTTGGACCATTCTCAAAGTTTCTCCAAAAGCCTCTCATCATCAAGAGGTTTTTTGCGAGCATTGAGCTTCAAAAGAAAAGCTAATGTAACAGATGGCGAAAGAAGCTGCCTCCTTAATTCGGACCCTAAGACATCTGCAGACAGTTCTAATATGGACTCCATATCTGAAGCTGCATGGAAAAGATGCACTTCTCTTCCTGTTACTCCTGCATCAACTTTGTCTCCTTCGGTCTCAACACCTGTTTCTGCAAGGACTTATACTGAACAGACTAAGCAGCATAAAGATGATGGTCGTTCCAAGGTTTCAAGGTCACTTTCTGTACCTGGGAGAAATGTTGTTATTGTAAGATCCATCTCTTTTTCTACCCGTAGTGAACAGGATCAGCAAGATGCAAACGATGATCAGATAACTCCTGTGCCACCCGAAGGTGCTGATGATGAAGAAATTCCTGAAGAGGAAGCCGTCTGCAGGATATGTCTTGATGTCTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTCAGACTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGAAGTATGCGGGCACGAGGTTCAGAATTTACCTGTAACCTTGCTTCGTGTTTCCAGCTCTGTTCAACGGCAAAGTAGACAACTGCAGGGTCAACAGAACCTAAGTTCAGAGTCAATAAATGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTTCTGCTTCCTGAGTTGAAGACTCAAGCCATCATAATAGCAGCACCATTTGCCTTTACGTTGGGCCTCCTGGCATCCATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTCGCTCTTGTGGCTATAACTGTGCATCTGTTTTATACTATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGAGCATCAACTATTTATATATCCAANNNNNNNNNNACAGGTTTCTCACAGTGATAACCTCCCAGTTTGAATTTCCTAAGAAGTGA | 1272 | 0.4237 | MQASATDEVSENAPQTNHHTNKEVSDNRPSGKRPDISLQVPPRPVGFGSTCGGRALDHSQSFSKSLSSSRGFLRALSFKRKANVTDGERSCLLNSDPKTSADSSNMDSISEAAWKRCTSLPVTPASTLSPSVSTPVSARTYTEQTKQHKDDGRSKVSRSLSVPGRNVVIVRSISFSTRSEQDQQDANDDQITPVPPEGADDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGHEVQNLPVTLLRVSSSVQRQSRQLQGQQNLSSESINAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAITVHLFYTMLHLKAIYAILLSSVLGFGIAMSINYLYIQXXXXRFLTVITSQFEFPKK | 423 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120886g00017 | 423 | PANTHER | OS02G0165000 PROTEIN | 30 | 409 | - | - | |
Stsc120886g00017 | 423 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 266 | IPR013083 | - | |
Stsc120886g00017 | 423 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Stsc120886g00017 | 423 | SMART | ringv_2 | 210 | 258 | IPR011016 | GO:0008270 | |
Stsc120886g00017 | 423 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Stsc120886g00017 | 423 | MobiDBLite | consensus disorder prediction | 86 | 107 | - | - | |
Stsc120886g00017 | 423 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 203 | 264 | IPR011016 | GO:0008270 | |
Stsc120886g00017 | 423 | MobiDBLite | consensus disorder prediction | 124 | 142 | - | - | |
Stsc120886g00017 | 423 | MobiDBLite | consensus disorder prediction | 178 | 202 | - | - | |
Stsc120886g00017 | 423 | SUPERFAMILY | RING/U-box | 207 | 261 | - | - | |
Stsc120886g00017 | 423 | CDD | RING_CH-C4HC3_MARCH | 211 | 258 | - | - | |
Stsc120886g00017 | 423 | MobiDBLite | consensus disorder prediction | 124 | 158 | - | - | |
Stsc120886g00017 | 423 | MobiDBLite | consensus disorder prediction | 88 | 107 | - | - | |
Stsc120886g00017 | 423 | Pfam | RING-variant domain | 211 | 257 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120886g00017 | Stsc-Chr120886 | 67002 | 70571 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120886g00017 | 164 | 318 | C3H Transcription Factor Family | AT2G37950 | 29.412 | 4.05e-11 | 60.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120886g00017 | - | - | gmx:100527094 | 608.216 |