Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120886g00016 ATGCAAACGATGATAACTCCTGTGCCACCCGAAGGTGCTGATGATGAAGAAATTCCTGAAGAGGAAGCCGTCTGCAGGATATGTCTTGATGTCTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTCAGACTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGAAGTATGCGGGCACGAGGTTCAGAATTTACCTGTAACCTTGCTTCGTGTTTCCAGCTCTGTTCAACGGCAAAGTAGACAACTGCAGGGTCAACAGAACCTAAGTTCAGAGTCAATAAATGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTTCTGCTTCCTGAGTTGAAGACTCAAGCCATCATAATAGCAGCACCATTTGCCTTTACGTTGGGCCTCCTGGCATCCATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTCGCTCTTGTGGCTATAACTGTGCATCTGTTTTATACTATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGAGCATCAACTATTTATATATCCAANNNNNNNNNNACAGGTTTCTCACAGTGATAACCTCCCAGTTTGAATTTCCTAAGAAGTGA 714 0.4104 MQTMITPVPPEGADDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGHEVQNLPVTLLRVSSSVQRQSRQLQGQQNLSSESINAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAITVHLFYTMLHLKAIYAILLSSVLGFGIAMSINYLYIQXXXXRFLTVITSQFEFPKK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120886g00016 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 80 IPR013083 -
Stsc120886g00016 237 PANTHER OS02G0165000 PROTEIN 12 223 - -
Stsc120886g00016 237 Pfam RING-variant domain 25 71 IPR011016 GO:0008270
Stsc120886g00016 237 ProSiteProfiles Zinc finger RING-CH-type profile. 17 78 IPR011016 GO:0008270
Stsc120886g00016 237 SMART ringv_2 24 72 IPR011016 GO:0008270
Stsc120886g00016 237 CDD RING_CH-C4HC3_MARCH 25 72 - -
Stsc120886g00016 237 SUPERFAMILY RING/U-box 21 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120886g00016 Stsc-Chr120886 66964 70571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120886g00016 38 128 C3H Transcription Factor Family AT5G59000 31.868 2.48e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120886g00016 - - gmx:100777100 350.517