Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120886g00013 ATGGAGCCCCTCCCTTCTCTTCCTCCTCCTCCTCCCCACAACAACATGGACGACGACCCTTCCTCAATTTGGGACCTCACTTACCTTCTCGACTTCAACATCGACGACGACCAAATCCCTTTACCCCTTGACTCTAACCAACCATCTCAACCGTTAGATTTCGCTCCTCCCGATCCGCACCGTATTCCTCCTCCTCCTCCTTCTCCTCTTCCCGCCAACGAGAAGGTTCGGAAACGCGACCCGAGGCTCACGTGCTCCAACTTTCTCGCGGGTCGGGTTCCGTGCGCGTGCCCCGAGCTCGATGCGCAGATCGAGAACGAAGGTCTTCCCGGTAGGAAGCGCGTGCGCACCGCTTCTTCCGCGCGTGGCTCCACCGTTTGTTGTCAGGTTCCCGGCTGCGAGGTCGATATCACGGAGCTGAAGGGGTACCATCGGAGGCACAGGGTTTGCCTCCGCTGTGCTAATGCTGCCACCGTTATGCTCGACGGCGAGGCCAAGAGATACTGTCAACAGTGTGGCAAGTTTCACGTGTTGTCGGATTTTGATGAAGGTAAACGTAGCTGTAGGAGAAAGTTAGAGCGCCATAACAACAGGAGGCGAAGAAAGCCAGCAGATTCAAGTGCTGCAGCTGCTCATGAACCTCTGCCTATTGCACAAAATGAGGATTCAAATAATGATGGGGAATCAGGAAAAGGTTTAGATTCTTCAAATTTGAGTAATGAAATAAATGAAAAGGAAGCGTCACTGGATCTTGAAGATGAACCAGTTGCTAATCTGAACACAGCTCCTGATATTCAGAATATTACAAATGACAGTGTTATGACTTTTCTTGCTTCTGGGGAAACACAAATGAATAGTGGAAAAGATGTTTCCAATCTCTCTAACTCTCCTTCATATTGTGACAATAAGAGTGCTTATTCATCTTTGTGCCAAACAGGTCGGATTTCTTTCAAGCTTTATGATTGGAACCCTGCAGAATTTCCTAGAAGGCTACGCCACCAAATATTCCAATGGTTGGCAAGTATGCCCGTAGAGCTTGAGGGATATATCCGCCCAGGGTGTACTATCCTGACAATTTTTATAGCCATGCCAAATAATATGTGGATAAATTTACTTGAAAACCCGATGTACTATGTGCGTGATCTTGTTGCTCCTGGAAAGATTCTATCTGCAAGAGGCAATGCACTAATTCATCTGAATGATATGGTCTTCCGCATTATGAAAGATGGAACGTCTGTGACAAAAGTCAAGGTAAACGCAAAGGCACCAAGACTTCACTATGTTCATCCCACATACTTTGAGGCTGGGAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTGATGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTCTGGGAAGTATCTGAAGTGTGAATATTGTGTTCCATCTCCACATAACTGGACTGGAAACAATATTTCTTGTTCTTTCGAGAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTCATTCCCATCCTCATTGGAGACAAAGAAGTTTGCAGTGAGATGACGGCGTTGCAGCAAAGATTAGACGAGTCTCTTCATTCTAAACGATTCCAGTCTACATCTGATGGTTCTATCTGCAGCTTGTGTGAAGATTTTGCACATAGTCACTCATTATCAGACTTGCTTGTAGATATAGCATGGTTGCTTAAGAACCCAACCTCAGAAAATTTTGAGAGAATAATGACGGCTTCACAAATTCAAAGATACTGTTACTTGTTGGACTTTCTTATATGCAATGATTCATTACTCATTTTGGAAAAAATATTACCAAAGTTGTTGATCTTGACAGAAAGCTTGAAATCAAATATTGTGATTAGTAGGACAAGTGATGTTGACTTGACACGACTACTGAATTGCATGCATCTTGCAAGAGATGTTATTTATCAGAATCATCAGAAAGGCAGAGGCATAGTTGTGCATTCTGAAACAGAAGGCTTTAGGATTGCTAAAACCTGCACCTTAGACAGCTTGCCATCAGTTTCAGGGATAAAAAGTCAGGATGTTCTTTCCAGAACGGATTCCAAGTTGGGAATAATGACAAGCCCAACATCTAATGACAAAACTGATAGGATACCACTTTTGAAGAGGGAGATTATAATGAACATGGAAGAGTTGCCTAAACAGTCCTGCCGGCGATATGTCGGTAGGGGATACTTGAACTCACGACCAGCAATAGTTATGATTGCTTCGGTTACTATTTGTCTTGGGGTATGTGTAGCCGTCCTTCACCGGGGGAGAGTTAGTGAGTTTGCTGTATCCATTAGAAGGTGTTTGTTTAACTCTTAG 2379 0.4401 MEPLPSLPPPPPHNNMDDDPSSIWDLTYLLDFNIDDDQIPLPLDSNQPSQPLDFAPPDPHRIPPPPPSPLPANEKVRKRDPRLTCSNFLAGRVPCACPELDAQIENEGLPGRKRVRTASSARGSTVCCQVPGCEVDITELKGYHRRHRVCLRCANAATVMLDGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSSAAAAHEPLPIAQNEDSNNDGESGKGLDSSNLSNEINEKEASLDLEDEPVANLNTAPDIQNITNDSVMTFLASGETQMNSGKDVSNLSNSPSYCDNKSAYSSLCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNNMWINLLENPMYYVRDLVAPGKILSARGNALIHLNDMVFRIMKDGTSVTKVKVNAKAPRLHYVHPTYFEAGKPMEFVACGSNLMQPKFRLLVSFSGKYLKCEYCVPSPHNWTGNNISCSFENQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPILIGDKEVCSEMTALQQRLDESLHSKRFQSTSDGSICSLCEDFAHSHSLSDLLVDIAWLLKNPTSENFERIMTASQIQRYCYLLDFLICNDSLLILEKILPKLLILTESLKSNIVISRTSDVDLTRLLNCMHLARDVIYQNHQKGRGIVVHSETEGFRIAKTCTLDSLPSVSGIKSQDVLSRTDSKLGIMTSPTSNDKTDRIPLLKREIIMNMEELPKQSCRRYVGRGYLNSRPAIVMIASVTICLGVCVAVLHRGRVSEFAVSIRRCLFNS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120886g00013 792 SUPERFAMILY SBT domain 126 205 IPR036893 GO:0003677|GO:0005634
Stsc120886g00013 792 MobiDBLite consensus disorder prediction 218 239 - -
Stsc120886g00013 792 MobiDBLite consensus disorder prediction 1 22 - -
Stsc120886g00013 792 Gene3D - 123 189 IPR036893 GO:0003677|GO:0005634
Stsc120886g00013 792 MobiDBLite consensus disorder prediction 1 16 - -
Stsc120886g00013 792 MobiDBLite consensus disorder prediction 192 239 - -
Stsc120886g00013 792 Pfam SBP domain 128 202 IPR004333 GO:0003677
Stsc120886g00013 792 MobiDBLite consensus disorder prediction 36 78 - -
Stsc120886g00013 792 MobiDBLite consensus disorder prediction 52 72 - -
Stsc120886g00013 792 ProSiteProfiles Zinc finger SBP-type profile. 125 202 IPR004333 GO:0003677
Stsc120886g00013 792 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 87 608 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120886g00013 Stsc-Chr120886 49524 55151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120886g00013 16 786 SBP-box Gene Family AT5G18830 47.163 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc120886g00013 SBP 7.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120886g00013 - - aprc:113863838 1117.06