Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120886g00004 ATGGCTGGATTGGACATTGATGAAGGTGGTGGTGGTGGAGTTTTAACAGATTACTCTCCAAGCAGTGTAGAATCAAGAACACCTGCATCTTCTAGAGCAAGCACTTCTGATTCTGAGGCTCTACCAGGAAGTGGTGGTTTCAGAGAAGGTGGTAGTGGTACTAATCCTAACAATCAATGGCGTGGTTTCTTCAAGCTTCTCAAGAAAGGTTCACAGATGCCATTTCAAACATTTCATCCTCTTAAGAGTGTTCCTAAGTTAACTAGGAGGAAGAGTAAGAGGGTTAGGGAGGATCTTATTCCTTCTCCAGCTTTGAATTCTTCTTTTGATTCTGCTGAGTTTGCAAACTTCAGATCTTCATGGAAGAATTTCACTCTCTCTGAACTCCAGGCTGCAACTGATGACTTCAGCCATGATAATGTGATTGGGGAGGGAGGGTATGCAGAGGTATACTTAGGGAAATTGGAAGATGGGAACTTTGTTGCCATAAAGAAGCTGACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGGATTATAGTTCATGTCAACCATCCAAACATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTCCTTGTTCTTCAGCTCTCTCCACATGGAAGCTTATCATCCATACTTTATGGGCCTAGAGAGAAGCTGAATTGGAGTCTGAGATTTAAGATTATCTTGGGAACTGCTGAAGGACTTTGCTATCTCCACGAGGGATGTCAAAGAAGGATCATTCACAAGGATATCAAGGCTTCTAACATTCTTCTCTCTGAGACATTTGAGCCTCAGATATCTGATTTTGGCCTAGCAAAGTGGTTACCTGATCAATGGACTCACCATACTGTGTCCAAAGTAGAAGGAACATTCGGGTACCTTCCCCCTGAATTCTTCATGCATGGTATAGTAGATGAGAAAACTGATGTATATGCTTATGGTGTGCTATTATTGGAGCTAATTACTGGAAGACAAGCTTTGGATAGCTCACAGAAAAGCCTTATTATGTGGGCAAAGCCTTTGTTAATTGCAAACAACATCAAAGACATTGTTGATCCAGTTCTAGGAGAAAATTATGATAAAGAGCAGATGAACCTTGTGATCTTAATAGCTTCTCAGTGTGTAGAGCAATCCTCGACTCAGCGGCCGCTTATGAGCGAGGCATGTTCGTTCTCTTTTATCTGTCACTGTCACTTTTTGATCGCGAAATATTCGAGCATTGTTTGTTTGGAATGA 1263 0.4165 MAGLDIDEGGGGGVLTDYSPSSVESRTPASSRASTSDSEALPGSGGFREGGSGTNPNNQWRGFFKLLKKGSQMPFQTFHPLKSVPKLTRRKSKRVREDLIPSPALNSSFDSAEFANFRSSWKNFTLSELQAATDDFSHDNVIGEGGYAEVYLGKLEDGNFVAIKKLTRGNQEEMTADFLSELGIIVHVNHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIILGTAEGLCYLHEGCQRRIIHKDIKASNILLSETFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLIMWAKPLLIANNIKDIVDPVLGENYDKEQMNLVILIASQCVEQSSTQRPLMSEACSFSFICHCHFLIAKYSSIVCLE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120886g00004 420 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 213 402 - -
Stsc120886g00004 420 SUPERFAMILY Protein kinase-like (PK-like) 121 410 IPR011009 -
Stsc120886g00004 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Stsc120886g00004 420 Gene3D Phosphorylase Kinase; domain 1 109 210 - -
Stsc120886g00004 420 Gene3D Transferase(Phosphotransferase) domain 1 213 403 - -
Stsc120886g00004 420 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Stsc120886g00004 420 PANTHER OS08G0249100 PROTEIN 32 398 IPR046958 -
Stsc120886g00004 420 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 106 210 - -
Stsc120886g00004 420 SMART serkin_6 136 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120886g00004 420 MobiDBLite consensus disorder prediction 1 57 - -
Stsc120886g00004 420 ProSiteProfiles Protein kinase domain profile. 136 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120886g00004 420 MobiDBLite consensus disorder prediction 18 41 - -
Stsc120886g00004 420 Pfam Protein kinase domain 138 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120886g00004 Stsc-Chr120886 11505 13306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120886g00004 113 400 Receptor kinase-like Gene Family AT1G53420 40.203 3.73e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc120886g00004 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120886g00004 - - gmx:100776081 620.542