Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120885g00036 ATGAGCATGGATGAATTCTTAGCCAGCATTTGGAGCTCTGAGGACAACAACAATGGCACAAATCAAACCCTTCATGATGAACAAGCTTCTCAACAAAACATAAAAACTGTTGGAGCAAAAACACAACAACAACAACAGCAGCAGGAGCAGGGCTCATTCTGTGTCCTTCCATCTCCAATTTGCAAGAAAACTGTGGAAGAAGTTTGGTCTGAGATCCACAAAGACCAAGCACCACAACAAAGGGATGAATCTAACAGAATTGGAATGAATGAGTCACTTAGAAAGCAACAAACACTTGGGGAAATGACATTGGAGGATTTTCTAATCAAAGCTGGTGTGGTGCAAGAATCAAAATTGTCATCAAAGTCAAGAGTTTCTACTACAACAACAATAATGCCATTAGTATTTCAAAATCAAGTTGTCAACATTGCAAGTAGTAATAGACCAACAGATGCAAGTTATGGAGTGAGGTCTCCTATGGGGGTAGGATTCCCTACCCAACAAAATCTGGTTAACCATGGGACTAATAACAATGGACTTGGACCATATCCAATGTTGTCACAGAATAGTAATAGCTCCACAAGGCTCATGAACTCGAGCGTGGGCGGTGGCAGGAAGAGGATAATTGATGGTCCTCCAGAAGTGGTGGTAGAGAGAAGGCAGCGCAGAATGTTGAAGAATCGAGAATCCGCCGCAAGATCACGGGCGAGAAGACAGGCATATACAGTTGAGCTAGAAGCAGAGCTGAATCTGCTAAAGCAAGAGAATGAGAATCTAAAACAAACTCTGGATGAAGCTGAGCGCAAGAGGAAACAAGAGATTTCAGAGAGGAAGCACACAACAAAGTCAGAAAAGAGGACTTCCAAAATGAGGGAAATAAGAAGGACAATTAGTGCAGAGTGGTGA 906 0.4238 MSMDEFLASIWSSEDNNNGTNQTLHDEQASQQNIKTVGAKTQQQQQQQEQGSFCVLPSPICKKTVEEVWSEIHKDQAPQQRDESNRIGMNESLRKQQTLGEMTLEDFLIKAGVVQESKLSSKSRVSTTTTIMPLVFQNQVVNIASSNRPTDASYGVRSPMGVGFPTQQNLVNHGTNNNGLGPYPMLSQNSNSSTRLMNSSVGGGRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNLLKQENENLKQTLDEAERKRKQEISERKHTTKSEKRTSKMREIRRTISAEW 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120885g00036 301 SMART brlzneu 215 279 IPR004827 GO:0003700|GO:0006355
Stsc120885g00036 301 Gene3D - 217 273 - -
Stsc120885g00036 301 MobiDBLite consensus disorder prediction 188 209 - -
Stsc120885g00036 301 MobiDBLite consensus disorder prediction 1 27 - -
Stsc120885g00036 301 MobiDBLite consensus disorder prediction 263 301 - -
Stsc120885g00036 301 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 222 237 IPR004827 GO:0003700|GO:0006355
Stsc120885g00036 301 Pfam bZIP transcription factor 219 271 IPR004827 GO:0003700|GO:0006355
Stsc120885g00036 301 Coils Coil 238 283 - -
Stsc120885g00036 301 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 299 IPR043452 GO:0003700|GO:0045893
Stsc120885g00036 301 SUPERFAMILY Leucine zipper domain 219 268 IPR046347 GO:0003700|GO:0006355
Stsc120885g00036 301 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 217 269 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120885g00036 Stsc-Chr120885 143378 145183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120885g00036 1 301 bZIP Transcription Factor Family AT3G44460 42.368 3.55e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120885g00036 bZIP_1 3.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120885g00036 K14432 - gmx:100799576 250.366