Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120885g00035 ATGCCTCAAGAGAAATGGTCTAAGGGCCTTGATCAGCATTCAGAAACGCTTCCTAGAAATTCTAGGAAGGGAGCTGGTTCCACATCAGAGAAACCACTTGATGCAAAGACATTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAAAGCCGTCTAAGAAAAAAGGCTTATGTGCAGCAATTAGAGTCAAGTAGATTAAAGCTTACACAACTTGAACAAGACCTTCAAAGGGCTCGTTCTCAGGGACTATTCATGGATTGTGGTGGTGTTGGAGGCAATCTAAGCCCTGATGCAGGAGGTGCGATGTTTGACATGGAATATGCAAGGTGGTTGGAGGAGGAGCAGCGGGTGATGGGGGAGCTGAGGAACGGGCTTCAGGCGCCGCTGTCGGACGGTGAAATGAGAGGAATAGTGGATGGATATTTGTCCCATTACGATGAACTCTTCAGGCTCAAGGCTGTTGCAGCAAAATCAGATGTATTCCACCTCATCAATGGCATGTGGACCTCCCAAGCCGAACGCTGCTTCCTCTGGATCGGCGGTTTCCGTCCCTCCGACCTCATCACGATGTTAATACAACAGTTGGAGCCACTAGCGGAGCAACAGATAATGGGAATGTATGGGCTGAGACATTCCTCACAGCAAGCGGAGGATGCGCTCTCTCAAGGCCTTGACCAGCTCCAGCAGTCTCTCGTAGACACCATCGCCGGCGGCCCCATCGTCGACGGTGTCCAGCAGATGGTGGTTGCAATGGGCAAGCTTGCCAATCTTGAAGGCTTTGTTCGCCAGGCTGATAATTTGAGACAGCAAACACTTCACCAATTATGCCGATTACTAACAGTTCGTCAAGCAGCACGCTGTTTTATTGTCATTGGAGAGTACTATGGACGCCTTCGTGCCCTTAGTTCTCTTTGGGCTTCAAGACCTAGAGAGACGTTGATGAGCGAAGATAATAACTCATGCCAAACAACCACCGACTTGCAAATGGTGCAACCTTCTCATCACCATCATCATTTCCCCACCTTCTGA 1032 0.4913 MPQEKWSKGLDQHSETLPRNSRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGLFMDCGGVGGNLSPDAGGAMFDMEYARWLEEEQRVMGELRNGLQAPLSDGEMRGIVDGYLSHYDELFRLKAVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEDALSQGLDQLQQSLVDTIAGGPIVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLMSEDNNSCQTTTDLQMVQPSHHHHHFPTF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120885g00035 343 ProSiteProfiles DOG1 domain profile. 101 309 IPR025422 GO:0006351|GO:0043565
Stsc120885g00035 343 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 39 54 IPR004827 GO:0003700|GO:0006355
Stsc120885g00035 343 FunFam BZIP family transcription factor 35 84 - -
Stsc120885g00035 343 PANTHER TRANSCRIPTION FACTOR TGA9 21 312 - -
Stsc120885g00035 343 Coils Coil 55 82 - -
Stsc120885g00035 343 MobiDBLite consensus disorder prediction 1 39 - -
Stsc120885g00035 343 Pfam bZIP transcription factor 35 77 IPR004827 GO:0003700|GO:0006355
Stsc120885g00035 343 Pfam Seed dormancy control 119 193 IPR025422 GO:0006351|GO:0043565
Stsc120885g00035 343 Gene3D - 35 84 - -
Stsc120885g00035 343 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 34 78 IPR004827 GO:0003700|GO:0006355
Stsc120885g00035 343 SMART brlzneu 32 97 IPR004827 GO:0003700|GO:0006355
Stsc120885g00035 343 SUPERFAMILY Leucine zipper domain 36 79 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120885g00035 Stsc-Chr120885 135897 139993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120885g00035 1 343 bZIP Transcription Factor Family AT1G08320 69.741 4.01e-173 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120885g00035 DOG1 3.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120885g00035 K14431 - gmx:778123 548.51