Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120885g00034 ATGTTCCCTTCATGGCCAATGAGATTTCACCAAACCTCAAGGGGAGGATCAAAATCAGGAGGGGAAAGCACTGATTCAGCACTTTCAACAAAAACTGAGCCACCCTTTGAAGCAGAATCTCCAATGAGTAAAAAGGCAACAACACCTTCTTCTTTAGAACAGCACCAGATTCAACATGATCATCATGATGCCTCAAGAATAATAGGCCCTTCTTCATCATCACAAGCCAAATCACCTCATGAAAAGAGGAAGGGAGCTGGTTCCACATCAGAGAAACCACTTGATGCAAAGACATTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAAAGCCGTCTAAGAAAAAAGGCTTATGTGCAGCAATTAGAGTCAAGTAGATTAAAGCTTACACAACTTGAACAAGACCTTCAAAGGGCTCGTTCTCAGGGACTATTCATGGATTGTGGTGGTGTTGGAGGCAATCTAAGCCCTGGAGGTGCGATGTTTGACATGGAATATGCAAGGTGGTTGGAGGAGGAGCAGCGGGTGATGGGGGAGCTGAGGAACGGGCTTCAGGCGCCGCTGTCGGACGGTGAAATGAGAGGAATAGTGGATGGATATTTGTCCCATTACGATGAACTCTTCAGGCTCAAGGCTGTTGCAGCAAAATCAGATGTATTCCACCTCATCAATGGCATGTGGACCTCCCAAGCCGAACGCTGCTTCCTCTGGATCGGCGGTTTCCGTCCCTCCGACCTCATCACGATGTTAATACAACAGTTGGAGCCACTAGCGGAGCAACAGATAATGGGAATGTATGGGCTGAGACATTCCTCACAGCAAGCGGAGGATGCGCTCTCTCAAGGCCTTGACCAGCTCCAGCAGTCTCTCGTAGACACCATCGCCGGCGGCCCCATCGTCGACGGTGTCCAGCAGATGGTGGTTGCAATGGGCAAGCTTGCCAATCTTGAAGGCTTTGTTCGCCAGGCTGATAATTTGAGACAGCAAACACTTCACCAATTATGCCGATTACTAACAGTTCGTCAAGCAGCACGCTGTTTTATTGTCATTGGAGAGTACTATGGACGCCTTCGTGCCCTTAGTTCTCTTTGGGCTTCAAGACCTAGAGAGACGTTGATGAGCGAAGATAATAACTCATGCCAAACAACCACCGACTTGCAAATGGTGCAACCTTCTCATCACCATCATCATTTCCCCACCTTCTGA 1209 0.4806 MFPSWPMRFHQTSRGGSKSGGESTDSALSTKTEPPFEAESPMSKKATTPSSLEQHQIQHDHHDASRIIGPSSSSQAKSPHEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGLFMDCGGVGGNLSPGGAMFDMEYARWLEEEQRVMGELRNGLQAPLSDGEMRGIVDGYLSHYDELFRLKAVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEDALSQGLDQLQQSLVDTIAGGPIVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLMSEDNNSCQTTTDLQMVQPSHHHHHFPTF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120885g00034 402 SUPERFAMILY Leucine zipper domain 97 140 IPR046347 GO:0003700|GO:0006355
Stsc120885g00034 402 Pfam Seed dormancy control 178 252 IPR025422 GO:0006351|GO:0043565
Stsc120885g00034 402 Coils Coil 116 143 - -
Stsc120885g00034 402 Pfam bZIP transcription factor 96 138 IPR004827 GO:0003700|GO:0006355
Stsc120885g00034 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 95 139 IPR004827 GO:0003700|GO:0006355
Stsc120885g00034 402 ProSiteProfiles DOG1 domain profile. 160 368 IPR025422 GO:0006351|GO:0043565
Stsc120885g00034 402 SMART brlzneu 93 158 IPR004827 GO:0003700|GO:0006355
Stsc120885g00034 402 FunFam BZIP family transcription factor 96 145 - -
Stsc120885g00034 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 100 115 IPR004827 GO:0003700|GO:0006355
Stsc120885g00034 402 MobiDBLite consensus disorder prediction 10 33 - -
Stsc120885g00034 402 Gene3D - 96 145 - -
Stsc120885g00034 402 CDD bZIP_HBP1b-like 97 147 - -
Stsc120885g00034 402 PANTHER TRANSCRIPTION FACTOR TGA9 37 371 - -
Stsc120885g00034 402 MobiDBLite consensus disorder prediction 1 99 - -
Stsc120885g00034 402 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120885g00034 Stsc-Chr120885 134568 139993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120885g00034 51 402 bZIP Transcription Factor Family AT1G08320 67.867 1.11e-174 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120885g00034 DOG1 4.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120885g00034 K14431 - gmx:100775461 642.499