Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120885g00033 ATGTTTCAGGGAAGAAGAGAATTATGGAGTAAGAAAGGTAGAAGAGTTGCATGCATGGGGAGCCACAGAATAATAGGAGGACTTGGTTTATCTGAGGCAGGGCCTTCAGCTACTCATCATCACCATGTCCCTACTTATGGTGTTCTTCATGGAATTAATACTACTCCATCAACTTTAATTAATGAAGGACATGCTTTTAACTTTGGAGAGTTGGAAGAGGCCATAGTTCTGCAAGGAGTAAAGGGTAGAAATGATGAAGGCAAAGCACCTTTATTCACAACTGCAGCAGCACCACCCAGACCTGCTGCTACACTAGACATGTTCCCTTCATGGCCAATGAGATTTCACCAAACCTCAAGGGGAGGATCAAAATCAGGAGGGGAAAGCACTGATTCAGCACTTTCAACAAAAACTGAGCCACCCTTTGAAGCAGAATCTCCAATGAGTAAAAAGGCAACAACACCTTCTTCTTTAGAACAGCACCAGATTCAACATGATCATCATGATGCCTCAAGAATAATAGGCCCTTCTTCATCATCACAAGCCAAATCACCTCATGAAAAGAGGAAGGGAGCTGGTTCCACATCAGAGAAACCACTTGATGCAAAGACATTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAAAGCCGTCTAAGAAAAAAGGCTTATGTGCAGCAATTAGAGTCAAGTAGATTAAAGCTTACACAACTTGAACAAGACCTTCAAAGGGCTCGTTCTCAGGGACTATTCATGGATTGTGGTGGTGTTGGAGGCAATCTAAGCCCTGGAGGTGCGATGTTTGACATGGAATATGCAAGGTGGTTGGAGGAGGAGCAGCGGGTGATGGGGGAGCTGAGGAACGGGCTTCAGGCGCCGCTGTCGGACGGTGAAATGAGAGGAATAGTGGATGGATATTTGTCCCATTACGATGAACTCTTCAGGCTCAAGGCTGTTGCAGCAAAATCAGATGTATTCCACCTCATCAATGGCATGTGGACCTCCCAAGCCGAACGCTGCTTCCTCTGGATCGGCGGTTTCCGTCCCTCCGACCTCATCACGATGTTAATACAACAGTTGGAGCCACTAGCGGAGCAACAGATAATGGGAATGTATGGGCTGAGACATTCCTCACAGCAAGCGGAGGATGCGCTCTCTCAAGGCCTTGACCAGCTCCAGCAGTCTCTCGTAGACACCATCGCCGGCGGCCCCATCGTCGACGGTGTCCAGCAGATGGTGGTTGCAATGGGCAAGCTTGCCAATCTTGAAGGCTTTGTTCGCCAGGCTGATAATTTGAGACAGCAAACACTTCACCAATTATGCCGATTACTAACAGTTCGTCAAGCAGCACGCTGTTTTATTGTCATTGGAGAGTACTATGGACGCCTTCGTGCCCTTAGTTCTCTTTGGGCTTCAAGACCTAGAGAGACGTTGATGAGCGAAGATAATAACTCATGCCAAACAACCACCGACTTGCAAATGGTGCAACCTTCTCATCACCATCATCATTTCCCCACCTTCTGA 1527 0.4702 MFQGRRELWSKKGRRVACMGSHRIIGGLGLSEAGPSATHHHHVPTYGVLHGINTTPSTLINEGHAFNFGELEEAIVLQGVKGRNDEGKAPLFTTAAAPPRPAATLDMFPSWPMRFHQTSRGGSKSGGESTDSALSTKTEPPFEAESPMSKKATTPSSLEQHQIQHDHHDASRIIGPSSSSQAKSPHEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGLFMDCGGVGGNLSPGGAMFDMEYARWLEEEQRVMGELRNGLQAPLSDGEMRGIVDGYLSHYDELFRLKAVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEDALSQGLDQLQQSLVDTIAGGPIVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLMSEDNNSCQTTTDLQMVQPSHHHHHFPTF 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120885g00033 508 MobiDBLite consensus disorder prediction 183 205 - -
Stsc120885g00033 508 ProSiteProfiles DOG1 domain profile. 266 474 IPR025422 GO:0006351|GO:0043565
Stsc120885g00033 508 PANTHER TRANSCRIPTION FACTOR TGA9 142 477 - -
Stsc120885g00033 508 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 206 221 IPR004827 GO:0003700|GO:0006355
Stsc120885g00033 508 Coils Coil 222 249 - -
Stsc120885g00033 508 Pfam Seed dormancy control 284 358 IPR025422 GO:0006351|GO:0043565
Stsc120885g00033 508 SMART brlzneu 199 264 IPR004827 GO:0003700|GO:0006355
Stsc120885g00033 508 MobiDBLite consensus disorder prediction 116 139 - -
Stsc120885g00033 508 FunFam BZIP family transcription factor 202 251 - -
Stsc120885g00033 508 Gene3D - 202 251 - -
Stsc120885g00033 508 CDD bZIP_HBP1b-like 203 253 - -
Stsc120885g00033 508 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 201 245 IPR004827 GO:0003700|GO:0006355
Stsc120885g00033 508 Pfam bZIP transcription factor 202 244 IPR004827 GO:0003700|GO:0006355
Stsc120885g00033 508 MobiDBLite consensus disorder prediction 106 205 - -
Stsc120885g00033 508 SUPERFAMILY Leucine zipper domain 203 246 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120885g00033 Stsc-Chr120885 134049 139971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120885g00033 157 508 bZIP Transcription Factor Family AT1G08320 67.867 4.69e-173 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120885g00033 DOG1 7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120885g00033 K14431 - gmx:100775461 748.043