Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120885g00032 ATGGGGAGCCACAGAATAATAGGAGGACTTGGTTTATCTGAGGCAGGGCCTTCAGCTACTCATCATCACCATGTCCCTACTTATGGTGTTCTTCATGGAATTAATACTACTCCATCAACTTTAATTAATGAAGGACATGCTTTTAACTTTGGAGAGTTGGAAGAGGCCATAGTTCTGCAAGGAGTAAAGGGTAGAAATGATGAAGGCAAAGCACCTTTATTCACAACTGCAGCAGCACCACCCAGACCTGCTGCTACACTAGACATGTTCCCTTCATGGCCAATGAGATTTCACCAAACCTCAAGGGGAGGATCAAAATCAGGAGGGGAAAGCACTGATTCAGCACTTTCAACAAAAACTGAGCCACCCTTTGAAGCAGAATCTCCAATGAGTAAAAAGGCAACAACACCTTCTTCTTTAGAACAGCACCAGATTCAACATGATCATCATGATGCCTCAAGAATAATAGGCCCTTCTTCATCATCACAAGCCAAATCACCTCATGAAAAGAGGAAGGGAGCTGGTTCCACATCAGAGAAACCACTTGATGCAAAGACATTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAAAGCCGTCTAAGAAAAAAGGCTTATGTGCAGCAATTAGAGTCAAGTAGATTAAAGCTTACACAACTTGAACAAGACCTTCAAAGGGCTCGTTCTCAGGGACTATTCATGGATTGTGGTGGTGTTGGAGGCAATCTAAGCCCTGGAGGTGCGATGTTTGACATGGAATATGCAAGGTGGTTGGAGGAGGAGCAGCGGGTGATGGGGGAGCTGAGGAACGGGCTTCAGGCGCCGCTGTCGGACGGTGAAATGAGAGGAATAGTGGATGGATATTTGTCCCATTACGATGAACTCTTCAGGCTCAAGGCTGTTGCAGCAAAATCAGATGTATTCCACCTCATCAATGGCATGTGGACCTCCCAAGCCGAACGCTGCTTCCTCTGGATCGGCGGTTTCCGTCCCTCCGACCTCATCACGATGTTAATACAACAGTTGGAGCCACTAGCGGAGCAACAGATAATGGGAATGTATGGGCTGAGACATTCCTCACAGCAAGCGGAGGATGCGCTCTCTCAAGGCCTTGACCAGCTCCAGCAGTCTCTCGTAGACACCATCGCCGGCGGCCCCATCGTCGACGGTGTCCAGCAGATGGTGGTTGCAATGGGCAAGCTTGCCAATCTTGAAGGCTTTGTTCGCCAGGCTGATAATTTGAGACAGCAAACACTTCACCAATTATGCCGATTACTAACAGTTCGTCAAGCAGCACGCTGTTTTATTGTCATTGGAGAGTACTATGGACGCCTTCGTGCCCTTAGTTCTCTTTGGGCTTCAAGACCTAGAGAGACGTTGATGAGCGAAGATAATAACTCATGCCAAACAACCACCGACTTGCAAATGGTGCAACCTTCTCATCACCATCATCATTTCCCCACCTTCTGA 1473 0.4732 MGSHRIIGGLGLSEAGPSATHHHHVPTYGVLHGINTTPSTLINEGHAFNFGELEEAIVLQGVKGRNDEGKAPLFTTAAAPPRPAATLDMFPSWPMRFHQTSRGGSKSGGESTDSALSTKTEPPFEAESPMSKKATTPSSLEQHQIQHDHHDASRIIGPSSSSQAKSPHEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGLFMDCGGVGGNLSPGGAMFDMEYARWLEEEQRVMGELRNGLQAPLSDGEMRGIVDGYLSHYDELFRLKAVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEDALSQGLDQLQQSLVDTIAGGPIVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLMSEDNNSCQTTTDLQMVQPSHHHHHFPTF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120885g00032 490 FunFam BZIP family transcription factor 184 233 - -
Stsc120885g00032 490 SUPERFAMILY Leucine zipper domain 185 228 IPR046347 GO:0003700|GO:0006355
Stsc120885g00032 490 CDD bZIP_HBP1b-like 185 235 - -
Stsc120885g00032 490 PANTHER TRANSCRIPTION FACTOR TGA9 124 459 - -
Stsc120885g00032 490 MobiDBLite consensus disorder prediction 165 187 - -
Stsc120885g00032 490 MobiDBLite consensus disorder prediction 98 121 - -
Stsc120885g00032 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Stsc120885g00032 490 Pfam bZIP transcription factor 184 226 IPR004827 GO:0003700|GO:0006355
Stsc120885g00032 490 ProSiteProfiles DOG1 domain profile. 248 456 IPR025422 GO:0006351|GO:0043565
Stsc120885g00032 490 Coils Coil 204 231 - -
Stsc120885g00032 490 SMART brlzneu 181 246 IPR004827 GO:0003700|GO:0006355
Stsc120885g00032 490 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351|GO:0043565
Stsc120885g00032 490 MobiDBLite consensus disorder prediction 95 187 - -
Stsc120885g00032 490 Gene3D - 184 233 - -
Stsc120885g00032 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120885g00032 Stsc-Chr120885 133763 139993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120885g00032 139 490 bZIP Transcription Factor Family AT1G08320 67.867 2.00e-173 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120885g00032 DOG1 6.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120885g00032 K14431 - gmx:100775461 748.043