Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120885g00031 ATGTATCATCATCAAGGGAAGAGCATGCACTCTTCTTCAAGAATTCCAATTCCCTCTGAGAGGCATATGTTCCTTCAAACAGGAAACGGGTCTGGTGACTCTGGACTAGTTCTCTCAACTGATGCTAAGCCGCGATTGAAATGGACACCAGATCTTCATGCCAGGTTCATAGAAGCAGTGAACCAGTTAGGTGGAGCTGATAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGTCTTACTTTATATCATCTGAAGAGCCATCTGCAGAAGTACAGATTGAGCAAGAATTTGCATGGACAAAACAACAATGTGACACACAAAATCACAACAAATGCGAGTGCAACAACAAGTGAAAGATCACTTTCTGAACCCAGTGGAACTCATATGAACAAGTTAAGCCTTGGACCACAGCCTAACAAAGATTTACATATAAGTGAGGCACTGCAGATGCAAATTGAAGTGCAGAGAAGGCTAAATGAACAGCTTGAGGTACAAAGACACTTGCAGCTTCGGATAGAGGCACAAGGAAAATACCTGCAGTCTGTGCTAGAGAAAGCTCAAGAGACACTTGGTGGACAAAATTTGGGAATGGTAGGACTTGAAGCTGCCAAAGTTCAACTATCAGAGCTGGTGTCCAAGGTCTCCTCCCAGTGCTTGAACTCAGCATTTTCGGAGCTGAAGGAACTACAAGGATTTTGCCCCCAGCAACCACAAACCAACCAGCCAAATGATTGCTCAATTGATAGTTGTCTCACATCTTGTGATGGTTCACAGAAGGAGCAAGATATACAGAATGGTGGAGTAGGTTTAAGGCACTTAAATTGCCATGGCCATGCATTCATGGAAAGGAAGGAAGGCACAGAAGCTCCTAAATGGAGTAATGAAGTGAAAAACAACACATTTCTAGCACCATTAGGCAAGAATTCAGAAAGAAGTAGCTATGGTGCAGAGAGAAGCAGTGGAAACTTGTCCATGAGCATTGGACTTGAAAGGGAAACTGAGAATGGAAGCAGCATGTACACTGAGAGTCACACTACTCACACAGAAGGTGAGTTCTGGCACAGGAACAGCAATGGGACAGAACCAAAGAAAGAAGCAATGGATGGAGGAAGAGGTTCTCAAGATTATAGGTTGCCTCCTCCTTACTTTTCAGCAGCAAGATTGGACTTAAACTCACATGGAGATACCAATGAAGCTGCAGCAACAACAACAACAACAAGAAGTTGTAAACAACTGGACTTGAACAGATTCAGTTGGAGCTGA 1275 0.4345 MYHHQGKSMHSSSRIPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQNNNVTHKITTNASATTSERSLSEPSGTHMNKLSLGPQPNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGGQNLGMVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQPQTNQPNDCSIDSCLTSCDGSQKEQDIQNGGVGLRHLNCHGHAFMERKEGTEAPKWSNEVKNNTFLAPLGKNSERSSYGAERSSGNLSMSIGLERETENGSSMYTESHTTHTEGEFWHRNSNGTEPKKEAMDGGRGSQDYRLPPPYFSAARLDLNSHGDTNEAAATTTTTRSCKQLDLNRFSWS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120885g00031 424 Coils Coil 149 169 - -
Stsc120885g00031 424 MobiDBLite consensus disorder prediction 308 327 - -
Stsc120885g00031 424 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 332 IPR044848 GO:0003700
Stsc120885g00031 424 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Stsc120885g00031 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 43 98 IPR006447 GO:0003677
Stsc120885g00031 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 100 IPR017930 -
Stsc120885g00031 424 Gene3D - 42 100 - -
Stsc120885g00031 424 MobiDBLite consensus disorder prediction 114 138 - -
Stsc120885g00031 424 MobiDBLite consensus disorder prediction 114 144 - -
Stsc120885g00031 424 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Stsc120885g00031 424 FunFam Myb family transcription factor 42 100 - -
Stsc120885g00031 424 MobiDBLite consensus disorder prediction 338 379 - -
Stsc120885g00031 424 MobiDBLite consensus disorder prediction 351 375 - -
Stsc120885g00031 424 Pfam Myb-like DNA-binding domain 45 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120885g00031 Stsc-Chr120885 120304 122877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120885g00031 75 424 G2-like Transcription Factor Family AT3G04030 50.559 4.73e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc120885g00031 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120885g00031 - - gmx:100810396 620.542