Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120885g00018 ATGGAGGATCCACCAACTGGTTTTCGATTCTATCCAACAGAAGAAGAGCTAGTTGCCTTCTACCTACACACCCAGCTACAAGGCCAAACCAATCACATTAACAGGGTCATTCCAGTAGTTGACATCAATGGCGTTGAGCCCTGGAATCTTCCATCACTAGCGGGAGAGCTTTGTAGGGAGGAGAAGGAACAATGGTTCTTTTTTGTGCCTCGACAAGAGAGGGAGGCGAGAGGGGGAAGGATCAATAGAACAACTGCTTCTGGCTACTGGAAAGCCACCGGATCACCGGGCTACGTCTACTCTTCGGATAACCAAGTCATTGGAGTCAAGAAAACCATGGTCTTCTACAAAGGGAAAGCTCCCACTGGCCGCAAAACCAAGTGGAAGATGCATGAGTACCGCGCCATTGTTCAAACCCCTAATAACCAATCCCCCACGCCTCCTCCTCCTCAGCTGAGGCATGAATTTAGCTTGTGTCGTGTGTATGTGATATCTGGAAGCTTTAGAGCCTTTGATCGACGCCCACGGGAGGTGCCAAGAGTTCATCATGGTCAGCATCAGCAGCAACAACATGAGCAAGGAGAATCATCAGCAAGGGTGGGAACCAATAATAATGGGTCAAGCTCATCGGAAACTTCCCTGTCATCACCAGGTGGTCCTGATTTGCCACCAGATACTGGAGGTGGAGGAGGGTCAAGTAGCAATTGGAATAGTAGTGGGGTTCAAGTTCAAGTTCAAGTTGAAGAACCTCTATGGGAATGGGAACAACTCGATTGGCTATAA 783 0.4879 MEDPPTGFRFYPTEEELVAFYLHTQLQGQTNHINRVIPVVDINGVEPWNLPSLAGELCREEKEQWFFFVPRQEREARGGRINRTTASGYWKATGSPGYVYSSDNQVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIVQTPNNQSPTPPPPQLRHEFSLCRVYVISGSFRAFDRRPREVPRVHHGQHQQQQHEQGESSARVGTNNNGSSSSETSLSSPGGPDLPPDTGGGGGSSSNWNSSGVQVQVQVEEPLWEWEQLDWL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120885g00018 260 MobiDBLite consensus disorder prediction 228 242 - -
Stsc120885g00018 260 MobiDBLite consensus disorder prediction 178 242 - -
Stsc120885g00018 260 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 202 - -
Stsc120885g00018 260 Gene3D NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Stsc120885g00018 260 MobiDBLite consensus disorder prediction 190 219 - -
Stsc120885g00018 260 SUPERFAMILY NAC domain 4 162 IPR036093 GO:0003677|GO:0006355
Stsc120885g00018 260 ProSiteProfiles NAC domain profile. 4 164 IPR003441 GO:0003677|GO:0006355
Stsc120885g00018 260 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120885g00018 Stsc-Chr120885 60687 61951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120885g00018 1 259 NAC Transcription Factor Family AT5G22380 54.406 5.95e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120885g00018 NAM 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120885g00018 - - gmx:100780264 318.931